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BMCBI
2008
142views more  BMCBI 2008»
14 years 10 months ago
Optimal neighborhood indexing for protein similarity search
Background: Similarity inference, one of the main bioinformatics tasks, has to face an exponential growth of the biological data. A classical approach used to cope with this data ...
Pierre Peterlongo, Laurent Noé, Dominique L...
DNA
2004
Springer
132views Bioinformatics» more  DNA 2004»
15 years 3 months ago
Error Free Self-assembly Using Error Prone Tiles
DNA self-assembly is emerging as a key paradigm for nano-technology, nano-computation, and several related disciplines. In nature, DNA self-assembly is often equipped with explicit...
Ho-Lin Chen, Ashish Goel
CSB
2004
IEEE
131views Bioinformatics» more  CSB 2004»
15 years 1 months ago
Improved Fourier Transform Method for Unsupervised Cell-Cycle Regulated Gene Prediction
Motivation: Cell-cycle regulated gene prediction using microarray time-course measurements of the mRNA expression levels of genes has been used by several researchers. The popular...
Karuturi R. Krishna Murthy, Liu Jian Hua
DNA
2006
Springer
146views Bioinformatics» more  DNA 2006»
15 years 1 months ago
On Times to Compute Shapes in 2D Tile Self-assembly
We study the times to grow structures within the tile self-assembly model proposed by Winfree, and the possible shapes that can be achieved. Our earlier work was confined to the g...
Yuliy M. Baryshnikov, Edward G. Coffman Jr., Boons...
BMCBI
2008
90views more  BMCBI 2008»
14 years 10 months ago
Ortholog-based protein-protein interaction prediction and its application to inter-species interactions
Background: The rapid growth of protein-protein interaction (PPI) data has led to the emergence of PPI network analysis. Despite advances in high-throughput techniques, the intera...
Sheng-An Lee, Chen-hsiung Chan, Chi-Hung Tsai, Jin...