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BMCBI
2010
149views more  BMCBI 2010»
15 years 3 hour ago
RuleMonkey: software for stochastic simulation of rule-based models
Background: The system-level dynamics of many molecular interactions, particularly protein-protein interactions, can be conveniently represented using reaction rules, which can be...
Joshua Colvin, Michael I. Monine, Ryan N. Gutenkun...
ENVSOFT
2006
72views more  ENVSOFT 2006»
14 years 12 months ago
Integrating legacy components into a software system for storm sewer simulation
This paper presents an approach that integrates a legacy component into a software system for storm sewer simulation. The legacy component employed here is the Storm Water Managem...
Shiu-Shin Lin, Shang-Hsien Hsieh, Jan-Tai Kuo, Yin...
BMCBI
2004
323views more  BMCBI 2004»
14 years 11 months ago
Biochemical Network Stochastic Simulator (BioNetS): software for stochastic modeling of biochemical networks
Background: Intrinsic fluctuations due to the stochastic nature of biochemical reactions can have large effects on the response of biochemical networks. This is particularly true ...
David Adalsteinsson, David McMillen, Timothy C. El...
ISCA
2012
IEEE
232views Hardware» more  ISCA 2012»
13 years 2 months ago
RADISH: Always-on sound and complete race detection in software and hardware
Data-race freedom is a valuable safety property for multithreaded programs that helps with catching bugs, simplifying memory consistency model semantics, and verifying and enforci...
Joseph Devietti, Benjamin P. Wood, Karin Strauss, ...
WICSA
2001
15 years 1 months ago
A Highly-Extensible, XML-Based Architecture Description Language
Software architecture research focuses on models of software architectures as specified in architecture description languages (ADLs). As research progresses in specific areas of s...
Eric M. Dashofy, André van der Hoek, Richar...