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RECOMB
2010
Springer
15 years 8 months ago
Dense Subgraphs with Restrictions and Applications to Gene Annotation Graphs
Abstract. In this paper, we focus on finding complex annotation patterns representing novel and interesting hypotheses from gene annotation data. We define a generalization of th...
Barna Saha, Allison Hoch, Samir Khuller, Louiqa Ra...
IEEEPACT
1997
IEEE
15 years 6 months ago
A Parallel Algorithm for Compile-Time Scheduling of Parallel Programs on Multiprocessors
† In this paper, we propose a parallel randomized algorithm, called Parallel Fast Assignment using Search Technique (PFAST), for scheduling parallel programs represented by direc...
Yu-Kwong Kwok, Ishfaq Ahmad
GECCO
2008
Springer
179views Optimization» more  GECCO 2008»
15 years 2 months ago
Evolution of discrete gene regulatory models
Gene regulatory networks (GRNs) are complex control systems that govern the interaction of genes, which ultimately control cellular processes at the protein level. GRNs can be ted...
Afshin Esmaeili, Christian Jacob
AI
2006
Springer
15 years 1 months ago
Controlled generation of hard and easy Bayesian networks: Impact on maximal clique size in tree clustering
This article presents and analyzes algorithms that systematically generate random Bayesian networks of varying difficulty levels, with respect to inference using tree clustering. ...
Ole J. Mengshoel, David C. Wilkins, Dan Roth
WSC
2000
15 years 3 months ago
Mathematical programming models of discrete event system dynamics
Analytical models for the dynamics of some discrete event systems are introduced where the system trajectories are solutions to linear and mixed-integer programs. 1 BACKGROUND The...
Lee Schruben