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BMCBI
2010
142views more  BMCBI 2010»
14 years 9 months ago
Classification of protein sequences by means of irredundant patterns
Background: The classification of protein sequences using string algorithms provides valuable insights for protein function prediction. Several methods, based on a variety of diff...
Matteo Comin, Davide Verzotto
79
Voted
BMCBI
2006
114views more  BMCBI 2006»
14 years 9 months ago
A high level interface to SCOP and ASTRAL implemented in Python
Background: Benchmarking algorithms in structural bioinformatics often involves the construction of datasets of proteins with given sequence and structural properties. The SCOP da...
James A. Casbon, Gavin E. Crooks, Mansoor A. S. Sa...
94
Voted
ISCA
2000
IEEE
93views Hardware» more  ISCA 2000»
15 years 1 months ago
Reconfigurable caches and their application to media processing
High performance general-purpose processors are increasingly being used for a variety of application domains scienti c, engineering, databases, and more recently, media processing...
Parthasarathy Ranganathan, Sarita V. Adve, Norman ...
ALMOB
2006
155views more  ALMOB 2006»
14 years 9 months ago
A phylogenetic generalized hidden Markov model for predicting alternatively spliced exons
Background: An important challenge in eukaryotic gene prediction is accurate identification of alternatively spliced exons. Functional transcripts can go undetected in gene expres...
Jonathan E. Allen, Steven L. Salzberg
PVM
1998
Springer
15 years 1 months ago
SKaMPI: A Detailed, Accurate MPI Benchmark
Abstract. SKaMPI is a benchmark for MPI implementations. Its purpose is the detailed analysis of the runtime of individual MPI operations and comparison of these for di erent imple...
Ralf Reussner, Peter Sanders, Lutz Prechelt, Matth...