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» Tools for visually exploring biological networks
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BMCBI
2011
14 years 7 months ago
The PathOlogist: An Automated Tool for Pathway-Centric Analysis
Background: The PathOlogist is a new tool designed to transform large sets of gene expression data into quantitative descriptors of pathway-level behavior. The tool aims to provid...
Sharon I. Greenblum, Sol Efroni, Carl F. Schaefer,...
BMCBI
2008
155views more  BMCBI 2008»
15 years 1 months ago
ComPath: comparative enzyme analysis and annotation in pathway/subsystem contexts
Background: Once a new genome is sequenced, one of the important questions is to determine the presence and absence of biological pathways. Analysis of biological pathways in a ge...
Kwangmin Choi, Sun Kim
CORR
2010
Springer
122views Education» more  CORR 2010»
14 years 12 months ago
Evolving Graph Representation and Visualization
The study of evolution of networks has received increased interest with the recent discovery that many real-world networks possess many things in common, in particular the manner ...
Anurat Chapanond, Mukkai S. Krishnamoorthy, G. M. ...
BMCBI
2004
156views more  BMCBI 2004»
15 years 1 months ago
GeneXplorer: an interactive web application for microarray data visualization and analysis
Background: When publishing large-scale microarray datasets, it is of great value to create supplemental websites where either the full data, or selected subsets corresponding to ...
Christian A. Rees, Janos Demeter, John C. Matese, ...
BMCBI
2007
103views more  BMCBI 2007»
15 years 1 months ago
eQTL Viewer: visualizing how sequence variation affects genome-wide transcription
Background: Expression Quantitative Trait Locus (eQTL) mapping methods have been used to identify the genetic basis of gene expression variations. To map eQTL, thousands of expres...
Wei Zou, David L. Aylor, Zhao-Bang Zeng