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IPPS
2009
IEEE
15 years 4 months ago
Exploring the effect of block shapes on the performance of sparse kernels
In this paper we explore the impact of the block shape on blocked and vectorized versions of the Sparse Matrix-Vector Multiplication (SpMV) kernel and build upon previous work by ...
Vasileios Karakasis, Georgios I. Goumas, Nectarios...
IPPS
2008
IEEE
15 years 4 months ago
Adaptive Locality-Effective Kernel Machine for protein phosphorylation site prediction
In this study, we propose a new machine learning model namely, Adaptive Locality-Effective Kernel Machine (Adaptive-LEKM) for protein phosphorylation site prediction. Adaptive-LEK...
Paul D. Yoo, Yung Shwen Ho, Bing Bing Zhou, Albert...
BMCBI
2010
124views more  BMCBI 2010»
14 years 9 months ago
Comparative analysis of acute and chronic corticosteroid pharmacogenomic effects in rat liver: Transcriptional dynamics and regu
Background: Comprehensively understanding corticosteroid pharmacogenomic effects is an essential step towards an insight into the underlying molecular mechanisms for both benefici...
Tung T. Nguyen, Richard R. Almon, Debra C. DuBois,...
IPPS
2007
IEEE
15 years 3 months ago
Memory Optimizations For Fast Power-Aware Sparse Computations
— We consider memory subsystem optimizations for improving the performance of sparse scientific computation while reducing the power consumed by the CPU and memory. We first co...
Konrad Malkowski, Padma Raghavan, Mary Jane Irwin
IEEEPACT
2002
IEEE
15 years 2 months ago
Effective Compilation Support for Variable Instruction Set Architecture
Traditional compilers perform their code generation tasks based on a fixed, pre-determined instruction set. This paper describes the implementation of a compiler that determines ...
Jack Liu, Timothy Kong, Fred C. Chow