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» Using Execution Trace Data to Improve Distributed Systems
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ISDA
2008
IEEE
15 years 4 months ago
Combining Clustering and Bayesian Network for Gene Network Inference
Gene network reconstruction is a multidisciplinary research area involving data mining, machine learning, statistics, ontologies and others. Reconstructed gene network allows us t...
Suhaila Zainudin, Safaai Deris
CLUSTER
2003
IEEE
15 years 3 months ago
A Case Study of Parallel I/O for Biological Sequence Search on Linux Clusters
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
BCS
2008
14 years 11 months ago
A Customisable Multiprocessor for Application-Optimised Inductive Logic Programming
This paper describes a customisable processor designed to accelerate execution of inductive logic programming, targeting advanced field-programmable gate array (FPGA) technology. ...
Andreas Fidjeland, Wayne Luk, Stephen Muggleton
BIOINFORMATICS
2011
14 years 4 months ago
Integrative network alignment reveals large regions of global network similarity in yeast and human
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Oleksii Kuchaiev, Natasa Przulj
ISCA
2012
IEEE
243views Hardware» more  ISCA 2012»
13 years 2 days ago
BlockChop: Dynamic squash elimination for hybrid processor architecture
Hybrid processors are HW/SW co-designed processors that leverage blocked-execution, the execution of regions of instructions as atomic blocks, to facilitate aggressive speculative...
Jason Mars, Naveen Kumar