Gene network reconstruction is a multidisciplinary research area involving data mining, machine learning, statistics, ontologies and others. Reconstructed gene network allows us t...
In this paper we analyze the I/O access patterns of a widely-used biological sequence search tool and implement two variations that employ parallel-I/O for data access based on PV...
Yifeng Zhu, Hong Jiang, Xiao Qin, David R. Swanson
This paper describes a customisable processor designed to accelerate execution of inductive logic programming, targeting advanced field-programmable gate array (FPGA) technology. ...
Motivation: High-throughput methods for detecting molecular interactions have produced large sets of biological network data with much more yet to come. Analogous to sequence alig...
Hybrid processors are HW/SW co-designed processors that leverage blocked-execution, the execution of regions of instructions as atomic blocks, to facilitate aggressive speculative...