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BMCBI
2006
100views more  BMCBI 2006»
15 years 3 months ago
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions
Background: Many genome projects are left unfinished due to complex, repeated regions. Finishing is the most time consuming step in sequencing and current finishing tools are not ...
Erik Arner, Martti T. Tammi, Anh-Nhi Tran, Ellen K...
BMCBI
2005
81views more  BMCBI 2005»
15 years 3 months ago
Evolutionary sequence analysis of complete eukaryote genomes
Background: Gene duplication and gene loss during the evolution of eukaryotes have hindered attempts to estimate phylogenies and divergence times of species. Although current meth...
Jaime E. Blair, Prachi Shah, S. Blair Hedges
159
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TSE
2011
165views more  TSE 2011»
14 years 10 months ago
Bristlecone: Language Support for Robust Software Applications
— We present Bristlecone, a programming language for robust software systems. Bristlecone applications have two components: a high-level organization specification that describe...
Brian Demsky, Sivaji Sundaramurthy
113
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ATAL
2009
Springer
15 years 10 months ago
An analysis of feasible solutions for multi-issue negotiation involving nonlinear utility functions
This paper analyzes bilateral multi-issue negotiation between selfinterested agents. Specifically, we consider the case where issues are divisible, there are time constraints in ...
S. Shaheen Fatima, Michael Wooldridge, Nicholas R....
BMCBI
2004
154views more  BMCBI 2004»
15 years 3 months ago
Base-By-Base: Single nucleotide-level analysis of whole viral genome alignments
Background: With ever increasing numbers of closely related virus genomes being sequenced, it has become desirable to be able to compare two genomes at a level more detailed than ...
Ryan Brodie, Alex J. Smith, Rachel L. Roper, Vasil...