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» Using constraint programming for lattice protein folding
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ICCS
2009
Springer
14 years 7 months ago
A Population-Based Approach for Diversified Protein Loop Structure Sampling
Protein loop structure modeling is regarded as a mini protein folding problem with significant scientific importance. Efficiently sampling the loop conformation space is a key step...
Yaohang Li
BMCBI
2007
160views more  BMCBI 2007»
14 years 10 months ago
Convergent algorithms for protein structural alignment
Background: Many algorithms exist for protein structural alignment, based on internal protein coordinates or on explicit superposition of the structures. These methods are usually...
Leandro Martínez, Roberto Andreani, Jos&eac...
BMCBI
2008
100views more  BMCBI 2008»
14 years 10 months ago
PatternLab for proteomics: a tool for differential shotgun proteomics
Background: A goal of proteomics is to distinguish between states of a biological system by identifying protein expression differences. Liu et al. demonstrated a method to perform...
Paulo C. Carvalho, Juliana S. G. Fischer, Emily I....
KDD
2007
ACM
177views Data Mining» more  KDD 2007»
15 years 10 months ago
Mining optimal decision trees from itemset lattices
We present DL8, an exact algorithm for finding a decision tree that optimizes a ranking function under size, depth, accuracy and leaf constraints. Because the discovery of optimal...
Élisa Fromont, Siegfried Nijssen
CJ
2010
150views more  CJ 2010»
14 years 7 months ago
Program Analysis Probably Counts
Abstract. Semantics-based program analysis uses an abstract semantics of programs/systems to statically determine run-time properties. Classic examples from compiler technology inc...
Alessandra Di Pierro, Chris Hankin, Herbert Wiklic...