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» Visual software tools for bioinformatics
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ICSM
2005
IEEE
15 years 7 months ago
IRiSS - A Source Code Exploration Tool
IRiSS (Information Retrieval based Software Search) is a software exploration tool that uses an indexing engine based on an information retrieval method. IRiSS is implemented as a...
Denys Poshyvanyk, Andrian Marcus, Yubo Dong, Andre...
BIBM
2007
IEEE
144views Bioinformatics» more  BIBM 2007»
15 years 8 months ago
Kinetic Modeling Using BioPAX Ontology
Thousands of biochemical interactions are available for download from curated databases such as Reactome, Pathway Interaction Database and other sources in the Biological Pathways...
Oliver Ruebenacker, Ion I. Moraru, James C. Schaff...
IV
2003
IEEE
150views Visualization» more  IV 2003»
15 years 7 months ago
Adapting Single-User Visualization Software for Collaborative Use
This paper presents our experiences with adapting single-user visualization software for web-based collaboration. Sun’s Java JXTA API was used to adapt an opensource molecular v...
Francis T. Marchese, Jude Mercado, Yi Pan
BMCBI
2008
132views more  BMCBI 2008»
15 years 2 months ago
The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes thr
Background: Data mining in large DNA sequences is a major challenge in microbial genomics and bioinformatics. Oligonucleotide usage (OU) patterns provide a wealth of information f...
Hamilton Ganesan, Anna S. Rakitianskaia, Colin F. ...
NAR
2006
120views more  NAR 2006»
15 years 1 months ago
TreeDomViewer: a tool for the visualization of phylogeny and protein domain structure
Phylogenetic analysis and examination of protein domains allow accurate genome annotation and are invaluable to study proteins and protein complex evolution. However, two sequence...
Blaise T. F. Alako, Daphne Rainey, Harm Nijveen, J...