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DNA
2009
Springer
194views Bioinformatics» more  DNA 2009»
15 years 8 months ago
A Domain-Specific Language for Programming in the Tile Assembly Model
We introduce a domain-specific language (DSL) for creating sets of tile types for simulations bstract Tile Assembly Model. The language defines objects known as tile templates, wh...
David Doty, Matthew J. Patitz
BIRD
2008
Springer
159views Bioinformatics» more  BIRD 2008»
15 years 6 months ago
Exploration of Evolutionary Relations between Protein Structures
Abstract. We describe a new method for the exploration of evolutionary relations between protein structures. The approach is based on the ESSM algorithm for detecting structural mu...
Natalja Kurbatova, Juris Viksna
CSMR
2000
IEEE
15 years 8 months ago
Analyzing Java Software by Combining Metrics and Program Visualization
Shimba, a prototype reverse engineering environment, has been built to support the understanding of Java software. Shimba uses Rigi and SCED to analyze, visualize, and explore the...
Tarja Systä, Ping Yu, Hausi A. Müller
SIGSOFT
2010
ACM
15 years 2 months ago
Using dynamic analysis to create trace-focused user interfaces for IDEs
This research demonstration presents the tool, Dynamic Interactive Views for Reverse Engineering (Diver). Diver supports software understanding through a trace focused user interf...
Del Myers, Margaret-Anne D. Storey
BMCBI
2006
116views more  BMCBI 2006»
15 years 4 months ago
JColorGrid: software for the visualization of biological measurements
Background: Two-dimensional data colourings are an effective medium by which to represent three-dimensional data in two dimensions. Such "color-grid" representations hav...
Marcin P. Joachimiak, Jennifer L. Weissman, Barnab...