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ISBRA
2010
Springer
15 years 8 months ago
Fast Computation of the Exact Hybridization Number of Two Phylogenetic Trees
Abstract. Hybridization is a reticulate evolutionary process. An established problem on hybridization is computing the minimum number of hybridization events, called the hybridizat...
Yufeng Wu, Jiayin Wang
JCT
2006
69views more  JCT 2006»
15 years 1 months ago
The Bergman complex of a matroid and phylogenetic trees
We study the Bergman complex B(M) of a matroid M: a polyhedral complex which arises in algebraic geometry, but which we describe purely combinatorially. We prove that a natural su...
Federico Ardila, Caroline J. Klivans
104
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IPPS
2003
IEEE
15 years 7 months ago
Phylogenetic Tree Inference on PC Architectures with AxML/PAxML
Inference of phylogenetic trees comprising hundreds or even thousands of organisms based on the maximum likelihood method is computationally extremely expensive. In previous work,...
Alexandros Stamatakis, Thomas Ludwig 0002
ALMOB
2008
81views more  ALMOB 2008»
15 years 2 months ago
Stability of multiple alignments and phylogenetic trees: an analysis of ABC-transporter proteins family
Background: Sequence-based phylogeny reconstruction is a fundamental task in Bioinformatics. Practically all methods for phylogeny reconstruction are based on multiple alignments....
Holger Wagner, Burkhard Morgenstern, Andreas W. M....
IPPS
2007
IEEE
15 years 8 months ago
RAxML-Cell: Parallel Phylogenetic Tree Inference on the Cell Broadband Engine
Computational phylogeny is a challenging application even for the most powerful supercomputers. It is also an ideal candidate for benchmarking emerging multiprocessor architecture...
Filip Blagojevic, Alexandros Stamatakis, Christos ...