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BMCBI
2005
134views more  BMCBI 2005»
15 years 1 months ago
Ancestral sequence alignment under optimal conditions
Background: Multiple genome alignment is an important problem in bioinformatics. An important subproblem used by many multiple alignment approaches is that of aligning two multipl...
Alexander K. Hudek, Daniel G. Brown 0001
BMCBI
2010
135views more  BMCBI 2010»
15 years 2 months ago
GIGA: a simple, efficient algorithm for gene tree inference in the genomic age
Background: Phylogenetic relationships between genes are not only of theoretical interest: they enable us to learn about human genes through the experimental work on their relativ...
Paul D. Thomas
107
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RECOMB
2005
Springer
16 years 2 months ago
Reconstruction of Reticulate Networks from Gene Trees
Abstract. One of the simplest evolutionary models has molecular sequences evolving from a common ancestor down a bifurcating phylogenetic tree, experiencing point-mutations along t...
Daniel H. Huson, Tobias H. Klöpper, Pete J. L...
BICOB
2009
Springer
15 years 8 months ago
Generalized Binary Tanglegrams: Algorithms and Applications
Several applications require the joint display of two phylogenetic trees whose leaves are matched by inter-tree edges. This issue arises, for example, when comparing gene trees and...
Mukul S. Bansal, Wen-Chieh Chang 0002, Oliver Eule...
CSB
2003
IEEE
15 years 7 months ago
Search for Evolution-Related-Oligonucleotides and Conservative Words in rRNA Sequences
We describe a method for finding ungapped conserved words in rRNA sequences that is effective, utilizes evolutionary information and does not depend on multiple sequence alignment...
Liaofu Luo, Li-Ching Hsieh, Fengmin Ji, Mengwen Ji...