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ISBRA
2010
Springer
15 years 5 months ago
A Novel Approach for Compressing Phylogenetic Trees
Abstract. Phylogenetic trees are tree structures that depict relationships between organisms. Popular analysis techniques often produce large collections of candidate trees, which ...
Suzanne Matthews, Seung-Jin Sul, Tiffani L. Willia...
IPPS
2007
IEEE
15 years 8 months ago
Building the Tree of Life on Terascale Systems
Bayesian phylogenetic inference is an important alternative to maximum likelihood-based phylogenetic method. However, inferring large trees using the Bayesian approach is computat...
Xizhou Feng, Kirk W. Cameron, Carlos P. Sosa, Bria...
BMCBI
2008
111views more  BMCBI 2008»
15 years 1 months ago
A perl package and an alignment tool for phylogenetic networks
Background: Phylogenetic networks are a generalization of phylogenetic trees that allow for the representation of evolutionary events acting at the population level, like recombin...
Gabriel Cardona, Francesc Rosselló, Gabriel...
BMCBI
2007
117views more  BMCBI 2007»
15 years 1 months ago
Supervised multivariate analysis of sequence groups to identify specificity determining residues
Background: Proteins that evolve from a common ancestor can change functionality over time, and it is important to be able identify residues that cause this change. In this paper ...
Iain M. Wallace, Desmond G. Higgins
GCB
2007
Springer
91views Biometrics» more  GCB 2007»
15 years 8 months ago
A Study on the Empirical Support for Prior Distributions on Phylogenetic Tree Topologies
: There are several models for the evolutionary process forming a species tree. We examine the Birth-and-Death model (BDM), the Proportional-to-Distinguishable Arrangements (PDA) m...
Lin Himmelmann, Dirk Metzler