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GD
2009
Springer
15 years 7 months ago
Semi-bipartite Graph Visualization for Gene Ontology Networks
Abstract. In this paper we propose three layout algorithms for semibipartite graphs—bipartite graphs with edges in one partition—that emerge from microarray experiment analysis...
Kai Xu 0003, Rohan Williams, Seok-Hee Hong, Qing L...
131
Voted
BMCBI
2005
124views more  BMCBI 2005»
15 years 2 months ago
ErmineJ: Tool for functional analysis of gene expression data sets
Background: It is common for the results of a microarray study to be analyzed in the context of biologically-motivated groups of genes such as pathways or Gene Ontology categories...
Homin K. Lee, William Braynen, Kiran Keshav, Paul ...
126
Voted
CSB
2005
IEEE
137views Bioinformatics» more  CSB 2005»
15 years 8 months ago
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays
Perhaps the most common question that a microarray study can ask is, “Between two given biological conditions, which genes exhibit changed expression levels?” Existing methods...
Will Sheffler, Eli Upfal, John Sedivy, William Sta...
124
Voted
AIME
2007
Springer
15 years 8 months ago
Hierarchical Latent Class Models and Statistical Foundation for Traditional Chinese Medicine
Traditional Chinese medicine (TCM) is an important avenue for disease prevention and treatment for the Chinese people and is gaining popularity among others. However, many remain s...
Nevin Lianwen Zhang, Shihong Yuan, Tao Chen, Yi Wa...
120
Voted
BMCBI
2010
105views more  BMCBI 2010»
15 years 2 months ago
Effects of scanning sensitivity and multiple scan algorithms on microarray data quality
Background: Maximizing the utility of DNA microarray data requires optimization of data acquisition through selection of an appropriate scanner setting. To increase the amount of ...
Andrew Williams, Errol M. Thomson