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CIBCB
2007
IEEE
15 years 10 months ago
An Experimental Evaluation of Inversion-and Transposition-Based Genomic Distances through Simulations
— Rearrangements of genes and other syntenic blocks have become a topic of intensive study by phylogenists, comparative genomicists, and computational biologists: they are a feat...
Moulik Kothari, Bernard M. E. Moret
IPPS
2007
IEEE
15 years 10 months ago
Software and Algorithms for Graph Queries on Multithreaded Architectures
Search-based graph queries, such as finding short paths and isomorphic subgraphs, are dominated by memory latency. If input graphs can be partitioned appropriately, large cluster...
Jonathan W. Berry, Bruce Hendrickson, Simon Kahan,...
ICMCS
2006
IEEE
154views Multimedia» more  ICMCS 2006»
15 years 10 months ago
Implementation and Evolution of Packet Striping for Media Streaming Over Multiple Burst-Loss Channels
Modern mobile devices are multi-homed with WLAN and WWAN communication interfaces. In a community of nodes with such multihomed devices — locally inter-connected via high-speed ...
Gene Cheung, Puneet Sharma, Sung-Ju Lee
ILP
2005
Springer
15 years 10 months ago
Machine Learning for Systems Biology
In this paper we survey work being conducted at Imperial College on the use of machine learning to build Systems Biology models of the effects of toxins on biochemical pathways. Se...
Stephen Muggleton
WEA
2005
Springer
176views Algorithms» more  WEA 2005»
15 years 10 months ago
High-Performance Algorithm Engineering for Large-Scale Graph Problems and Computational Biology
Abstract. Many large-scale optimization problems rely on graph theoretic solutions; yet high-performance computing has traditionally focused on regular applications with high degre...
David A. Bader