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BMCBI
2002
137views more  BMCBI 2002»
14 years 11 months ago
ORFer - retrieval of protein sequences and open reading frames from GenBank and storage into relational databases or text files
Background: Functional genomics involves the parallel experimentation with large sets of proteins. This requires management of large sets of open reading frames as a prerequisite ...
Konrad Büssow, Steve Hoffmann, Volker Sievert
BMCBI
2011
14 years 6 months ago
Assessing the benefits of using mate-pairs to resolve repeats in de novo short-read prokaryotic assemblies
Background: Next-generation sequencing technologies allow genomes to be sequenced more quickly and less expensively than ever before. However, as sequencing technology has improve...
Joshua Wetzel, Carl Kingsford, Mihai Pop
WWW
2003
ACM
16 years 15 days ago
Mining topic-specific concepts and definitions on the web
Traditionally, when one wants to learn about a particular topic, one reads a book or a survey paper. With the rapid expansion of the Web, learning in-depth knowledge about a topic...
Bing Liu, Chee Wee Chin, Hwee Tou Ng
HT
2009
ACM
15 years 6 months ago
Cross-tagging for personalized open social networking
The Social Web is successfully established and poised for continued growth. Web 2.0 applications such as blogs, bookmarking, music, photo and video sharing systems are among the m...
Avare Stewart, Ernesto Diaz-Aviles, Wolfgang Nejdl...
SIGIR
2009
ACM
15 years 6 months ago
Addressing morphological variation in alphabetic languages
The selection of indexing terms for representing documents is a key decision that limits how effective subsequent retrieval can be. Often stemming algorithms are used to normaliz...
Paul McNamee, Charles K. Nicholas, James Mayfield