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NAR
2011
260views Computer Vision» more  NAR 2011»
14 years 1 months ago
ASD: a comprehensive database of allosteric proteins and modulators
Allostery is the most direct, rapid and efficient way of regulating protein function, ranging from the control of metabolic mechanisms to signaltransduction pathways. However, an ...
Zhimin Huang, Liang Zhu, Yan Cao, Geng Wu, Xinyi L...
IPPS
2007
IEEE
15 years 5 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
BIRD
2007
Springer
107views Bioinformatics» more  BIRD 2007»
15 years 5 months ago
Prediction of Structurally-Determined Coiled-Coil Domains with Hidden Markov Models
The coiled-coil protein domain is a widespread structural motif known to be involved in a wealth of key interactions in cells and organisms. Coiled-coil recognition and prediction ...
Piero Fariselli, Daniele Molinini, Rita Casadio, A...
ECML
2007
Springer
15 years 5 months ago
Conceptual Clustering Applied to Ontologies
Abstract. A clustering method is presented which can be applied to semantically annotated resources in the context of ontological knowledge bases. This method can be used to discov...
Floriana Esposito, Nicola Fanizzi, Claudia d'Amato
IPPS
2006
IEEE
15 years 5 months ago
An overview of the Jahob analysis system: project goals and current status
We present an overview of the Jahob system for modular analysis of data structure properties. Jahob uses a subset of Java as the implementation language and annotations with formu...
Viktor Kuncak, Martin C. Rinard