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BIOTECHNO
2008
IEEE
15 years 4 months ago
Directional Invariance of Co-occurrence Matrices within the Liver
Co-occurrence matrices are one of three texture algorithms commonly used on Computed Tomography (CT) images. In this paper we analyze the directional invariance of Co-occurrence m...
Carl Philips, Daniel Li, Daniela Stan Raicu, Jacob...
BIRD
2008
Springer
119views Bioinformatics» more  BIRD 2008»
14 years 11 months ago
Implementation of a Swap Matching Algorithm Using a Graph Theoretic Model
The swap matching problem consists if finding a pattern in a text, while allowing for transpositions in the pattern. A new approach using a graph-theoretic model was presented in [...
Pavlos Antoniou, Costas S. Iliopoulos, Inuka Jayas...
118
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BIRD
2008
Springer
221views Bioinformatics» more  BIRD 2008»
14 years 11 months ago
Comparison of Exact String Matching Algorithms for Biological Sequences
Exact matching of single patterns in DNA and amino acid sequences is studied. We performed an extensive experimental comparison of algorithms presented in the literature. In additi...
Petri Kalsi, Hannu Peltola, Jorma Tarhio
BIOINFORMATICS
2008
119views more  BIOINFORMATICS 2008»
14 years 9 months ago
Optimal design of thermally stable proteins
Motivation: For many biotechnological purposes, it is desirable to redesign proteins to be more structurally and functionally stable at higher temperatures. For example, chemical ...
Ryan M. Bannen, Vanitha Suresh, George N. Phillips...
BIRD
2008
Springer
177views Bioinformatics» more  BIRD 2008»
14 years 11 months ago
Fast Structured Motif Search in DNA Sequences
We study the problem of structured motif search in DNA sequences. This is a fundamental task in bioinformatics which contributes to better understanding of genome characteristics a...
Mihail Halachev, Nematollaah Shiri