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CSB
2005
IEEE
137views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Improving Operon Prediction in E. coli
In bacterium, genes working in the same pathway or interacting with each other are often organized into operons. Currently, the prediction accuracy for operon/boundary gene pairs ...
PhuongAn Dam, Victor Olman, Ying Xu
CSB
2005
IEEE
152views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Consensus Genetic Maps: A Graph Theoretic Approach
A genetic map is an ordering of genetic markers constructed from genetic linkage data for use in linkage studies and experimental design. While traditional methods have focused on...
Benjamin G. Jackson, Srinivas Aluru, Patrick S. Sc...
CSB
2005
IEEE
136views Bioinformatics» more  CSB 2005»
15 years 3 months ago
An Algebraic Geometry Approach to Protein Structure Determination from NMR Data
Our paper describes the first provably-efficient algorithm for determining protein structures de novo, solely from experimental data. We show how the global nature of a certain ...
Lincong Wang, Ramgopal R. Mettu, Bruce Randall Don...
CSB
2005
IEEE
146views Bioinformatics» more  CSB 2005»
15 years 3 months ago
Multi-Metric and Multi-Substructure Biclustering Analysis for Gene Expression Data
A good number of biclustering algorithms have been proposed for grouping gene expression data. Many of them have adopted matrix norms to define the similarity score of a bicluste...
Sun-Yuan Kung, Man-Wai Mak, Ilias Tagkopoulos
CSB
2005
IEEE
137views Bioinformatics» more  CSB 2005»
15 years 3 months ago
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays
Perhaps the most common question that a microarray study can ask is, “Between two given biological conditions, which genes exhibit changed expression levels?” Existing methods...
Will Sheffler, Eli Upfal, John Sedivy, William Sta...