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JCC
2002
67views more  JCC 2002»
14 years 9 months ago
Quasi-degenerate perturbation theory with general multiconfiguration self-consistent field reference functions
: The quasi-degenerate perturbation theory (QDPT) with complete active space (CAS) self-consistent field (SCF) reference functions is extended to the general multiconfiguration (MC...
Haruyuki Nakano, Ryuma Uchiyama, Kimihiko Hirao
JCC
2002
80views more  JCC 2002»
14 years 9 months ago
Consistent treatment of inter- and intramolecular polarization in molecular mechanics calculations
: A protocol is described for the treatment of molecular polarization in force field calculations. The resulting model is consistent in that both inter- and intramolecular polariza...
Pengyu Ren, Jay W. Ponder
JCC
2002
74views more  JCC 2002»
14 years 9 months ago
Determination of the effective dielectric constant from the accurate solution of the Poisson equation
: Constant dielectric (CD) and distance-dependent dielectric (DDD) functions are the most popular and widespread in the Molecular Mechanics simulations of large molecular systems. ...
Vladislav Vasilyev
JCC
2002
61views more  JCC 2002»
14 years 9 months ago
A fast pairwise evaluation of molecular surface area
: A fast and general analytical approach was developed for the calculation of the approximate van der Waals and solvent-accessible surface areas. The method is based on three basic...
Vladislav Vasilyev, Enrico O. Purisima
JCC
2010
105views more  JCC 2010»
14 years 7 months ago
PAPER - Accelerating parallel evaluations of ROCS
Abstract: Modern graphics processing units (GPUs) are flexibly programmable and have peak computational throughput significantly faster than conventional CPUs. Herein, we describ...
Imran S. Haque, Vijay S. Pande