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NAR
2016
42views more  NAR 2016»
10 years 3 months ago
APD3: the antimicrobial peptide database as a tool for research and education
The antimicrobial peptide database (APD, http://aps. unmc.edu/AP/) is an original database initially online in 2003. The APD2 (2009 version) has been regularly updated and further...
Guangshun Wang, Xia Li, Zhe Wang
NAR
2016
42views more  NAR 2016»
10 years 3 months ago
PlantDHS: a database for DNase I hypersensitive sites in plants
Gene expression is regulated by orchestrated binding of regulatory proteins to promoters and other cis-regulatory DNA elements (CREs). Several plant databases have been developed ...
Tao Zhang, Alexandre P. Marand, Jiming Jiang
NAR
2016
45views more  NAR 2016»
10 years 3 months ago
MutationAligner: a resource of recurrent mutation hotspots in protein domains in cancer
The MutationAligner web resource, available at http:// www.mutationaligner.org, enables discovery and exploration of somatic mutation hotspots identified in protein domains in cu...
Nicholas Paul Gauthier, Ed Reznik, Jianjiong Gao, ...
NAR
2016
37views more  NAR 2016»
10 years 3 months ago
Gramene 2016: comparative plant genomics and pathway resources
Gramene (http://www.gramene.org) is an online resource for comparative functional genomics in crops and model plant species. Its two main frameworks are genomes (collaboration wit...
Marcela K. Tello-Ruiz, Joshua C. Stein, Sharon Wei...
NAR
2016
39views more  NAR 2016»
10 years 3 months ago
hPSCreg - the human pluripotent stem cell registry
Stefanie Seltmann, Fritz Lekschas, Robert Mül...
NAR
2016
70views more  NAR 2016»
10 years 3 months ago
dbSUPER: a database of super-enhancers in mouse and human genome
Super-enhancers are the clusters of transcriptional enhancers that can drive cell-type-specific gene expression and also crucial in cell identity. Many disease-associated sequence...
Aziz Khan, Xuegong Zhang
NAR
2016
35views more  NAR 2016»
10 years 3 months ago
The MetaCyc database of metabolic pathways and enzymes and the BioCyc collection of pathway/genome databases
MetaCyc (MetaCyc.org) is a universal database of metabolic pathways and enzymes from all domains of life. The pathways in MetaCyc are curated from the primary scientific literatur...
Ron Caspi, Richard Billington, Luciana Ferrer, Har...
NAR
2016
63views more  NAR 2016»
10 years 3 months ago
InterRNA: a database of base interactions in RNA structures
A major component of RNA structure stabilization are the hydrogen bonded interactions between the base residues. The importance and biological relevance for large clusters of base...
Sri Devan Appasamy, Hazrina Yusof Hamdani, Effirul...
NAR
2016
37views more  NAR 2016»
10 years 3 months ago
Colorectal cancer atlas: An integrative resource for genomic and proteomic annotations from colorectal cancer cell lines and tis
In order to advance our understanding of colorectal cancer (CRC) development and progression, biomedical researchers have generated large amounts of OMICS data from CRC patient sa...
David Chisanga, Shivakumar Keerthikumar, Mohashin ...