Sciweavers

NAR
2016
41views more  NAR 2016»
9 years 11 months ago
MitoCarta2.0: an updated inventory of mammalian mitochondrial proteins
Mitochondria are complex organelles that house essential pathways involved in energy metabolism, ion homeostasis, signalling and apoptosis. To understand mitochondrial pathways in...
Sarah E. Calvo, Karl R. Clauser, Vamsi K. Mootha
NAR
2016
48views more  NAR 2016»
9 years 11 months ago
HaploReg v4: systematic mining of putative causal variants, cell types, regulators and target genes for human complex traits and
More than 90% of common variants associated with complex traits do not affect proteins directly, but instead the circuits that control gene expression. This has increased the urge...
Lucas D. Ward, Manolis Kellis
NAR
2016
39views more  NAR 2016»
9 years 11 months ago
BacWGSTdb, a database for genotyping and source tracking bacterial pathogens
Whole genome sequencing has become one of the routine methods in molecular epidemiological practice. In this study, we present BacWGSTdb (http: //bacdb.org/BacWGSTdb), a bacterial...
Zhi Ruan, Ye Feng
NAR
2016
47views more  NAR 2016»
9 years 11 months ago
ccmGDB: a database for cancer cell metabolism genes
Accumulating evidence has demonstrated that rewiring of metabolism in cells is an important hallmark of cancer. The percentage of patients killed by metabolic disorder has been es...
Pora Kim, Feixiong Cheng, Junfei Zhao, Zhongming Z...
NAR
2016
40views more  NAR 2016»
9 years 11 months ago
The Dfam database of repetitive DNA families
Repetitive DNA, especially that due to transposable elements (TEs), makes up a large fraction of many genomes. Dfam is an open access database of families of repetitive DNA elemen...
Robert Hubley, Robert D. Finn, Jody Clements, Sean...
NAR
2016
36views more  NAR 2016»
9 years 11 months ago
DriverDBv2: a database for human cancer driver gene research
We previously presented DriverDB, a database that incorporates ∼6000 cases of exome-seq data, in addition to annotation databases and published bioinformatics algorithms dedicat...
I-Fang Chung, Chen-Yang Chen, Shih-Chieh Su, Chia-...
NAR
2016
33views more  NAR 2016»
9 years 11 months ago
KLIFS: a structural kinase-ligand interaction database
Protein kinases play a crucial role in cell signaling and are important drug targets in several therapeutic areas. The KLIFS database contains detailed structural kinase-ligand in...
Albert J. Kooistra, Georgi K. Kanev, Oscar P. J. v...
NAR
2016
43views more  NAR 2016»
9 years 11 months ago
Ensembl Genomes 2016: more genomes, more complexity
Ensembl Genomes (http://www.ensemblgenomes. org) is an integrating resource for genome-scale data from non-vertebrate species, complementing the resources for vertebrate genomics ...
Paul Julian Kersey, James E. Allen, Irina Armean, ...
NAR
2016
40views more  NAR 2016»
9 years 11 months ago
JuncDB: an exon-exon junction database
Intron positions upon the mRNA transcript are sometimes remarkably conserved even across distantly related eukaryotic species. This has made the comparison of intron–exon archit...
Michal Chorev, Lotem Guy, Liran Carmel