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BMCBI
2008
85views more  BMCBI 2008»
14 years 9 months ago
Predicted mouse peroxisome-targeted proteins and their actual subcellular locations
Background: The import of most intraperoxisomal proteins is mediated by peroxisome targeting signals at their C-termini (PTS1) or N-terminal regions (PTS2). Both signals have been...
Yumi Mizuno, Igor Kurochkin, Marlis Herberth, Yasu...
BMCBI
2008
71views more  BMCBI 2008»
14 years 9 months ago
An improved string composition method for sequence comparison
Background: Historically, two categories of computational algorithms (alignment-based and alignment-free) have been applied to sequence comparison
Guoqing Lu, Shunpu Zhang, Xiang Fang
BMCBI
2008
75views more  BMCBI 2008»
14 years 9 months ago
Discovering relationships among dispersed repeats using spatial association rule mining
Surya Saha, Susan Bridges, Zenaida Magbanua, Danie...
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BMCBI
2008
132views more  BMCBI 2008»
14 years 9 months ago
Clustering ionic flow blockade toggles with a Mixture of HMMs
Background: Ionic current blockade signal processing, for use in nanopore detection, offers a promising new way to analyze single molecule properties with potential implications f...
Alexander G. Churbanov, Stephen Winters-Hilt
BMCBI
2008
104views more  BMCBI 2008»
14 years 9 months ago
InteroPORC: an automated tool to predict highly conserved protein interaction networks
teps. First, we abstracted protein interactions onto orthologous cluster links. For a given source interaction, if both proteins belonged to a cluster, we constructed a link betwee...
Magali Michaut, Samuel Kerrien, Luisa Montecchi-Pa...
BMCBI
2008
63views more  BMCBI 2008»
14 years 9 months ago
Recognizing speculative language in biomedical research articles: a linguistically motivated perspective
We explore a linguistically motivated approach to the problem of recognizing speculative language ("hedging") in biomedical research articles. We describe a method, whic...
Halil Kilicoglu, Sabine Bergler
BMCBI
2008
104views more  BMCBI 2008»
14 years 9 months ago
Analyzing the simplicial decomposition of spatial protein structures
Background: The fast growing Protein Data Bank contains the three-dimensional description of more than 45000 protein- and nucleic-acid structures today. The large majority of the ...
Rafael Ördög, Zoltan Szabadka, Vince Gro...
BMCBI
2008
141views more  BMCBI 2008»
14 years 9 months ago
MiRTif: a support vector machine-based microRNA target interaction filter
Background: MicroRNAs (miRNAs) are a set of small non-coding RNAs serving as important negative gene regulators. In animals, miRNAs turn down protein translation by binding to the...
Yuchen Yang, Yu-Ping Wang, Kuo-Bin Li
BMCBI
2008
158views more  BMCBI 2008»
14 years 9 months ago
Real value prediction of protein solvent accessibility using enhanced PSSM features
Background: Prediction of protein solvent accessibility, also called accessible surface area (ASA) prediction, is an important step for tertiary structure prediction directly from...
Darby Tien-Hao Chang, Hsuan-Yu Huang, Yu-Tang Syu,...
BMCBI
2008
102views more  BMCBI 2008»
14 years 9 months ago
Stability of the core domain of p53: insights from computer simulations
: The tumour suppressor protein p53 protein has a core domain that binds DNA and is the site for most oncogenic mutations. This domain is quite unstable compared to its homologs p...
Arumugam Madhumalar, Derek John Smith, Chandra Ver...