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107
Voted
BMCBI
2010
117views more  BMCBI 2010»
15 years 27 days ago
Automatic, context-specific generation of Gene Ontology slims
Background: The use of ontologies to control vocabulary and structure annotation has added value to genomescale data, and contributed to the capture and re-use of knowledge across...
Melissa J. Davis, Muhammad Shoaib B. Sehgal, Mark ...
112
Voted
BMCBI
2010
147views more  BMCBI 2010»
15 years 27 days ago
Automatic detection of anchor points for multiple sequence alignment
Background: Determining beforehand specific positions to align (anchor points) has proved valuable for the accuracy of automated multiple sequence alignment (MSA) software. This f...
Florian Pitschi, Claudine Devauchelle, Eduardo Cor...
44
Voted
BMCBI
2010
55views more  BMCBI 2010»
15 years 27 days ago
The structural and content aspects of abstracts versus bodies of full text journal articles are different
K. Bretonnel Cohen, Helen L. Johnson, Karin Verspo...
99
Voted
BMCBI
2010
155views more  BMCBI 2010»
15 years 27 days ago
A flexible R package for nonnegative matrix factorization
Background: Nonnegative Matrix Factorization (NMF) is an unsupervised learning technique that has been applied successfully in several fields, including signal processing, face re...
Renaud Gaujoux, Cathal Seoighe
106
Voted
BMCBI
2010
123views more  BMCBI 2010»
15 years 27 days ago
eGIFT: Mining Gene Information from the Literature
Background: With the biomedical literature continually expanding, searching PubMed for information about specific genes becomes increasingly difficult. Not only can thousands of r...
Catalina O. Tudor, Carl J. Schmidt, K. Vijay-Shank...
109
Voted
BMCBI
2010
193views more  BMCBI 2010»
15 years 27 days ago
caGrid Workflow Toolkit: A Taverna based workflow tool for cancer Grid
Background: In biological and medical domain, the use of web services made the data and computation functionality accessible in a unified manner, which helped automate the data pi...
Wei Tan, Ravi K. Madduri, Aleksandra Nenadic, Stia...
138
Voted
BMCBI
2010
149views more  BMCBI 2010»
15 years 27 days ago
A multifactorial analysis of obesity as CVD risk factor: Use of neural network based methods in a nutrigenetics context
Background: Obesity is a multifactorial trait, which comprises an independent risk factor for cardiovascular disease (CVD). The aim of the current work is to study the complex eti...
Ioannis K. Valavanis, Stavroula G. Mougiakakou, Ke...
BMCBI
2010
64views more  BMCBI 2010»
15 years 27 days ago
Multivariate Hawkes process models of the occurrence of regulatory elements
Lisbeth Carstensen, Albin Sandelin, Ole Winther, N...
BMCBI
2010
154views more  BMCBI 2010»
15 years 27 days ago
An algorithm for automated closure during assembly
Background: Finishing is the process of improving the quality and utility of draft genome sequences generated by shotgun sequencing and computational assembly. Finishing can invol...
Sergey Koren, Jason R. Miller, Brian Walenz, Grang...
BMCBI
2010
132views more  BMCBI 2010»
15 years 27 days ago
Next generation tools for genomic data generation, distribution, and visualization
Background: With the rapidly falling cost and availability of high throughput sequencing and microarray technologies, the bottleneck for effectively using genomic analysis in the ...
David A. Nix, Tonya L. Di Sera, Brian K. Dalley, B...