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BIOCOMP
2007
10 years 1 months ago
Prediction of trans-antisense Transcripts in Arabidopsis thaliana
Background: Natural antisense transcripts (NATs) are coding or non-coding RNAs with sequence complementarity to other transcripts (sense transcripts). These RNAs could potentially...
Huan Wang, Nam-Hai Chua, Xiu-Jie Wang
BIOCOMP
2007
10 years 1 months ago
Towards Phylogenomic Reconstruction
Reconstructing phylogenies is one of the primary objectives in evolution studies. Efficient software to reconstruct phylogenies based on isolated genes has existed for decades, ye...
Le Vinh, Andres Varon, Daniel Janies, Ward Wheeler
BIOCOMP
2007
10 years 1 months ago
Learning Node Replacement Graph Grammars in Metabolic Pathways
— This paper describes graph-based relational, unsupervised learning algorithm to infer node replacement graph grammar and its application to metabolic pathways. We search for fr...
Jacek P. Kukluk, Chang Hun You, Lawrence B. Holder...
BIOCOMP
2007
10 years 1 months ago
Aldose Reductase and Nitric Oxide Synthase Role in Diabetic Retinopathy: A Bioinformatics Study
- Diabetic retinopathy is the leading cause of blindness among patients with diabetes mellitus. We investigated the role of several proteins that are likely to be involved in the d...
Hanuman Thota, Nageswara rao Kunjam, Suresh Babu C...
BIOCOMP
2007
10 years 1 months ago
xMAN: extreme MApping of oligoNucleotides
Background: The ability to rapidly map millions of oligonucleotide fragments to a reference genome is crucial to many high throughput genomic technologies. Results: We propose an ...
Wei Li, Jason S. Carroll, Myles Brown, X. Shirley ...
BIOCOMP
2007
10 years 1 months ago
Stability Analysis of Genetic Regulatory Network with Additive Noises
Background: Genetic regulatory networks (GRN) can be described by differential equations with SUM logic which has been found in many natural systems. Identification of the network...
Yufang Jin
BIOCOMP
2007
10 years 1 months ago
Interaction Models for Biochemical Reactions
Abstract—This paper presents a stochastic modelling framework for complex biochemical reaction networks from a component-based perspective. Our approach takes into account the di...
Mila E. Majster-Cederbaum, Nils Semmelrock, Verena...
BIOCOMP
2007
10 years 1 months ago
Quality-Based Similarity Search for Biological Sequence Databases
Low-Complexity Regions (LCRs) of biological sequences are the main source of false positives in similarity searches for biological sequence databases. We consider the problem of ...
Xuehui Li, Tamer Kahveci
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