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BIBE
15 years 2 months ago
2005 IEEE 
In this article we present novel preprocessing techniques, based on topological measures of the network, to identify clusters of proteins from Protein-protein interaction (PPI) ne...
BIBE
15 years 2 months ago
2005 IEEE 
PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
BIBE
15 years 2 months ago
2005 IEEE 
We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
BIBE
15 years 2 months ago
2005 IEEE 
We propose two novel dynamic programming (DP) methods that solve the the approximate bounded and unbounded global alignment problems for biological sequences. Our first method so...
BIBE
15 years 2 months ago
2005 IEEE 
RNA plays a critical role in mediating every step of cellular information transfer from genes to functional proteins. Pseudoknots are widely occurring structural motifs found in a...
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Bioinformatics