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    157
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    2005
    IEEE
    154views Bioinformatics» more  BIBE 2005»
    Effective Pre-Processing Strategies for Functional Clustering of a Protein-Protein Interactions Network
    15 years 8 months ago
    Effective Pre-Processing Strategies for Functional Clustering of a Protein-Protein Interactions Network
    Download  www.cse.ohio-state.edu
    In this article we present novel preprocessing techniques, based on topological measures of the network, to identify clusters of proteins from Protein-protein interaction (PPI) ne...
    Duygu Ucar, Srinivasan Parthasarathy, Sitaram Asur...
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    128
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    2005
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    126views Bioinformatics» more  BIBE 2005»
    Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches
    15 years 8 months ago
    Suboptimal Alignments Improve the Detection of Weak Homologs in Sequence Database Searches
    Download  cannoli.mps.ohio-state.edu
    PSI-BLAST remains one of the popular tools for searching remote homologs in sequence databases. We recently demonstrated that hybrid alignment can function as the alignment core f...
    Yuheng Li, Mario Lauria, Ralf Bundschuh
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    135
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    126views Bioinformatics» more  BIBE 2005»
    Highly Scalable and Accurate Seeds for Subsequence Alignment
    15 years 8 months ago
    Highly Scalable and Accurate Seeds for Subsequence Alignment
    Download  www.cise.ufl.edu
    We propose a method for finding seeds for the local alignment of two nucleotide sequences. Our method uses randomized algorithms to find approximate seeds. We present a dynamic ...
    Abhijit Pol, Tamer Kahveci
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    115
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    124views Bioinformatics» more  BIBE 2005»
    Approximate Global Alignment of Sequences
    15 years 8 months ago
    Approximate Global Alignment of Sequences
    Download  www.ideal.ece.ufl.edu
    We propose two novel dynamic programming (DP) methods that solve the the approximate bounded and unbounded global alignment problems for biological sequences. Our first method so...
    Tamer Kahveci, Venkatakrishnan Ramaswamy, Han Tao,...
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    126
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    2005
    IEEE
    121views Bioinformatics» more  BIBE 2005»
    RNA Pseudoknot Prediction Using Term Rewriting
    15 years 8 months ago
    RNA Pseudoknot Prediction Using Term Rewriting
    Download  www.cs.missouri.edu
    RNA plays a critical role in mediating every step of cellular information transfer from genes to functional proteins. Pseudoknots are widely occurring structural motifs found in a...
    Xuezheng Fu, Hao Wang, William L. Harrison, Robert...
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