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CPM
2005
Springer
206views Combinatorics» more  CPM 2005»
15 years 6 months ago
A Fast Algorithm for Approximate String Matching on Gene Sequences
Abstract. Approximate string matching is a fundamental and challenging problem in computer science, for which a fast algorithm is highly demanded in many applications including tex...
Zheng Liu, Xin Chen, James Borneman, Tao Jiang
68
Voted
CPM
2005
Springer
194views Combinatorics» more  CPM 2005»
15 years 6 months ago
DNA Compression Challenge Revisited: A Dynamic Programming Approach
Behshad Behzadi, Fabrice Le Fessant
68
Voted
CPM
2005
Springer
142views Combinatorics» more  CPM 2005»
15 years 6 months ago
Assessing the Significance of Sets of Words
Valentina Boeva, Julien Clément, Mireille R...
108
Voted
CPM
2005
Springer
125views Combinatorics» more  CPM 2005»
15 years 2 months ago
Parametric Analysis for Ungapped Markov Models of Evolution
We present efficient sensitivity-analysis algorithms for two problems involving Markov models of sequence evolution: ancestral reconstruction in evolutionary trees and local ungap...
David Fernández-Baca, Balaji Venkatachalam
CPM
2005
Springer
123views Combinatorics» more  CPM 2005»
15 years 6 months ago
A Simple Fast Hybrid Pattern-Matching Algorithm
Abstract. The Knuth-Morris-Pratt (KMP) pattern-matching algorithm guarantees both independence from alphabet size and worst-case execution time linear in the pattern length; on the...
Frantisek Franek, Christopher G. Jennings, William...
Combinatorics
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