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» A New Algorithm for Answer Set Computation
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ACL
2010
15 years 4 months ago
Efficient Staggered Decoding for Sequence Labeling
The Viterbi algorithm is the conventional decoding algorithm most widely adopted for sequence labeling. Viterbi decoding is, however, prohibitively slow when the label set is larg...
Nobuhiro Kaji, Yasuhiro Fujiwara, Naoki Yoshinaga,...
BMCBI
2010
190views more  BMCBI 2010»
15 years 6 months ago
A parallel and incremental algorithm for efficient unique signature discovery on DNA databases
Background: DNA signatures are distinct short nucleotide sequences that provide valuable information that is used for various purposes, such as the design of Polymerase Chain Reac...
Hsiao Ping Lee, Tzu-Fang Sheu, Chuan Yi Tang
BMCBI
2005
132views more  BMCBI 2005»
15 years 6 months ago
Kalign - an accurate and fast multiple sequence alignment algorithm
Background: The alignment of multiple protein sequences is a fundamental step in the analysis of biological data. It has traditionally been applied to analyzing protein families f...
Timo Lassmann, Erik L. L. Sonnhammer
247
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SIGCOMM
2006
ACM
16 years 12 days ago
Algorithms to accelerate multiple regular expressions matching for deep packet inspection
There is a growing demand for network devices capable of examining the content of data packets in order to improve network security and provide application-specific services. Most...
Sailesh Kumar, Sarang Dharmapurikar, Fang Yu, Patr...
IPPS
2007
IEEE
16 years 23 days ago
Optimizing Sorting with Machine Learning Algorithms
The growing complexity of modern processors has made the development of highly efficient code increasingly difficult. Manually developing highly efficient code is usually expen...
Xiaoming Li, María Jesús Garzar&aacu...