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» A structural alignment kernel for protein structures
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BIOCOMP
2008
14 years 11 months ago
GIPSCo: A Method for Comparison of Protein Structures Based on Geometric Invariants
Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
Sandeep Deshmukh, Aniket Dalal, Pramod Wangikar
ACL
2010
14 years 7 months ago
Exploring Syntactic Structural Features for Sub-Tree Alignment Using Bilingual Tree Kernels
We propose Bilingual Tree Kernels (BTKs) to capture the structural similarities across a pair of syntactic translational equivalences and apply BTKs to sub-tree alignment along wi...
Jun Sun, Min Zhang, Chew Lim Tan
ACL
2003
14 years 11 months ago
Hierarchical Directed Acyclic Graph Kernel: Methods for Structured Natural Language Data
This paper proposes the “Hierarchical Directed Acyclic Graph (HDAG) Kernel” for structured natural language data. The HDAG Kernel directly accepts several levels of both chunk...
Jun Suzuki, Tsutomu Hirao, Yutaka Sasaki, Eisaku M...
BMCBI
2008
87views more  BMCBI 2008»
14 years 9 months ago
Protein structure search and local structure characterization
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Shih-Yen Ku, Yuh-Jyh Hu
BMCBI
2008
114views more  BMCBI 2008»
14 years 9 months ago
Indel PDB: A database of structural insertions and deletions derived from sequence alignments of closely related proteins
Background: Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions. Recent research ...
Michael Hsing, Artem Cherkasov