Protein structure comparison is important for elucidation of evolutionary relationships, function and functionally important amino acid residues. We propose Geometric Invariant bas...
We propose Bilingual Tree Kernels (BTKs) to capture the structural similarities across a pair of syntactic translational equivalences and apply BTKs to sub-tree alignment along wi...
This paper proposes the “Hierarchical Directed Acyclic Graph (HDAG) Kernel” for structured natural language data. The HDAG Kernel directly accepts several levels of both chunk...
Jun Suzuki, Tsutomu Hirao, Yutaka Sasaki, Eisaku M...
Background: Structural similarities among proteins can provide valuable insight into their functional mechanisms and relationships. As the number of available three-dimensional (3...
Background: Insertions and deletions (indels) represent a common type of sequence variations, which are less studied and pose many important biological questions. Recent research ...