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DAM
2010
137views more  DAM 2010»
15 years 4 months ago
H-join decomposable graphs and algorithms with runtime single exponential in rankwidth
We introduce H -join decompositions of graphs, indexed by a fixed bipartite graph H . These decompositions are based on a graph operation that we call H -join, which adds edges be...
Binh-Minh Bui-Xuan, Jan Arne Telle, Martin Vatshel...
BMCBI
2006
169views more  BMCBI 2006»
15 years 4 months ago
Finding biological process modifications in cancer tissues by mining gene expression correlations
Background: Through the use of DNA microarrays it is now possible to obtain quantitative measurements of the expression of thousands of genes from a biological sample. This techno...
Giacomo Gamberoni, Sergio Storari, Stefano Volinia
BMCBI
2006
112views more  BMCBI 2006»
15 years 4 months ago
A phylogenomic gene cluster resource: the Phylogenetically Inferred Groups (PhIGs) database
Background: We present here the PhIGs database, a phylogenomic resource for sequenced genomes. Although many methods exist for clustering gene families, very few attempt to create...
Paramvir S. Dehal, Jeffrey L. Boore
BMCBI
2006
137views more  BMCBI 2006»
15 years 4 months ago
Chaos game representation for comparison of whole genomes
Background: Chaos game representation of genome sequences has been used for visual representation of genome sequence patterns as well as alignment-free comparisons of sequences ba...
Jijoy Joseph, Roschen Sasikumar
BMCBI
2006
190views more  BMCBI 2006»
15 years 4 months ago
VANTED: A system for advanced data analysis and visualization in the context of biological networks
Background: Recent advances with high-throughput methods in life-science research have increased the need for automatized data analysis and visual exploration techniques. Sophisti...
Björn H. Junker, Christian Klukas, Falk Schre...