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» Ensembl Genomes 2016: more genomes, more complexity
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NAR
2011
267views Computer Vision» more  NAR 2011»
14 years 4 months ago
EcoCyc: a comprehensive database of Escherichia coli biology
EcoCyc (http://EcoCyc.org) is a comprehensive model organism database for Escherichia coli K-12 MG1655. From the scientific literature, EcoCyc captures the functions of individual...
Ingrid M. Keseler, Julio Collado-Vides, Alberto Sa...
RECOMB
2005
Springer
15 years 10 months ago
Reconstruction of Reticulate Networks from Gene Trees
Abstract. One of the simplest evolutionary models has molecular sequences evolving from a common ancestor down a bifurcating phylogenetic tree, experiencing point-mutations along t...
Daniel H. Huson, Tobias H. Klöpper, Pete J. L...
RECOMB
2004
Springer
15 years 10 months ago
Designing multiple simultaneous seeds for DNA similarity search
The challenge of similarity search in massive DNA sequence databases has inspired major changes in BLAST-style alignment tools, which accelerate search by inspecting only pairs of...
Yanni Sun, Jeremy Buhler
MM
2006
ACM
178views Multimedia» more  MM 2006»
15 years 4 months ago
Multimedia signal processing for behavioral quantification in neuroscience
While there have been great advances in quantification of the genotype of organisms, including full genomes for many species, the quantification of phenotype is at a comparatively...
Peter Andrews, Haibin Wang, Dan Valente, Jih&egrav...
ISAAC
1998
Springer
99views Algorithms» more  ISAAC 1998»
15 years 2 months ago
On the Multiple Gene Duplication Problem
Abstract. A fundamental problem in computational biology is the determination of the correct species tree for a set of taxa given a set of possibly contradictory gene trees. In rec...
Michael R. Fellows, Michael T. Hallett, Ulrike Ste...