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» Expected Sequence Similarity Maximization
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BIRD
2008
Springer
162views Bioinformatics» more  BIRD 2008»
13 years 8 months ago
Suffix Tree Characterization of Maximal Motifs in Biological Sequences
Finding motifs in biological sequences is one of the most intriguing problems for string algorithms designers due to, on the one hand, the numerous applications of this problem in...
Maria Federico, Nadia Pisanti
JMLR
2010
129views more  JMLR 2010»
13 years 1 months ago
Expectation Truncation and the Benefits of Preselection In Training Generative Models
We show how a preselection of hidden variables can be used to efficiently train generative models with binary hidden variables. The approach is based on Expectation Maximization (...
Jörg Lücke, Julian Eggert
ALMOB
2006
89views more  ALMOB 2006»
13 years 6 months ago
On the maximal cliques in c-max-tolerance graphs and their application in clustering molecular sequences
Given a set S of n locally aligned sequences, it is a needed prerequisite to partition it into groups of very similar sequences to facilitate subsequent computations, such as the ...
Katharina Anna Lehmann, Michael Kaufmann, Stephan ...
BMCBI
2010
108views more  BMCBI 2010»
13 years 3 months ago
Prediction of RNA secondary structure by maximizing pseudo-expected accuracy
Background: Recent studies have revealed the importance of considering the entire distribution of possible secondary structures in RNA secondary structure predictions; therefore, ...
Michiaki Hamada, Kengo Sato, Kiyoshi Asai
ICPR
2006
IEEE
14 years 9 days ago
Gesture Segmentation from a Video Sequence Using Greedy Similarity Measure
We propose a novel method of greedy similarity measure to segment long spatial-temporal video sequences. Firstly, a principal curve of motion region along frames of a video sequen...
Qiulei Dong, Yihong Wu, Zhanyi Hu