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ALMOB
2006
80views more  ALMOB 2006»
14 years 12 months ago
Pattern statistics on Markov chains and sensitivity to parameter estimation
Background: In order to compute pattern statistics in computational biology a Markov model is commonly used to take into account the sequence composition. Usually its parameter mu...
Grégory Nuel
BIOINFORMATICS
2006
142views more  BIOINFORMATICS 2006»
14 years 12 months ago
Intervention in a family of Boolean networks
Motivation: Intervention in a gene regulatory network is used to avoid undesirable states, such as those associated with a disease. Several types of intervention have been studied...
Ashish Choudhary, Aniruddha Datta, Michael L. Bitt...
BMCBI
2006
147views more  BMCBI 2006»
14 years 12 months ago
A case study in pathway knowledgebase verification
Background: Biological databases and pathway knowledgebases are proliferating rapidly. We are developing software tools for computer-aided hypothesis design and evaluation, and we...
Stephen A. Racunas, Nigam Shah, Nina V. Fedoroff
BMCBI
2006
151views more  BMCBI 2006»
14 years 12 months ago
Modeling Sage data with a truncated gamma-Poisson model
Background: Serial Analysis of Gene Expressions (SAGE) produces gene expression measurements on a discrete scale, due to the finite number of molecules in the sample. This means t...
Helene H. Thygesen, Aeilko H. Zwinderman
COMCOM
2006
88views more  COMCOM 2006»
14 years 12 months ago
Using attack graphs for correlating, hypothesizing, and predicting intrusion alerts
To defend against multi-step intrusions in high-speed networks, efficient algorithms are needed to correlate isolated alerts into attack scenarios. Existing correlation methods us...
Lingyu Wang, Anyi Liu, Sushil Jajodia