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» Gene-set approach for expression pattern analysis
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SIAMJO
2010
127views more  SIAMJO 2010»
14 years 4 months ago
Trace Norm Regularization: Reformulations, Algorithms, and Multi-Task Learning
We consider a recently proposed optimization formulation of multi-task learning based on trace norm regularized least squares. While this problem may be formulated as a semidefini...
Ting Kei Pong, Paul Tseng, Shuiwang Ji, Jieping Ye
102
Voted
FQAS
2004
Springer
146views Database» more  FQAS 2004»
15 years 1 months ago
Discovering Representative Models in Large Time Series Databases
The discovery of frequently occurring patterns in a time series could be important in several application contexts. As an example, the analysis of frequent patterns in biomedical ...
Simona E. Rombo, Giorgio Terracina
90
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CSB
2005
IEEE
137views Bioinformatics» more  CSB 2005»
15 years 3 months ago
A Learned Comparative Expression Measure for Affymetrix GeneChip DNA Microarrays
Perhaps the most common question that a microarray study can ask is, “Between two given biological conditions, which genes exhibit changed expression levels?” Existing methods...
Will Sheffler, Eli Upfal, John Sedivy, William Sta...
BMCBI
2008
259views more  BMCBI 2008»
14 years 9 months ago
DISCLOSE : DISsection of CLusters Obtained by SEries of transcriptome data using functional annotations and putative transcripti
Background: A typical step in the analysis of gene expression data is the determination of clusters of genes that exhibit similar expression patterns. Researchers are confronted w...
Evert-Jan Blom, Sacha A. F. T. van Hijum, Klaas J....
BMCBI
2006
126views more  BMCBI 2006»
14 years 9 months ago
OpWise: Operons aid the identification of differentially expressed genes in bacterial microarray experiments
Background: Differentially expressed genes are typically identified by analyzing the variation between replicate measurements. These procedures implicitly assume that there are no...
Morgan N. Price, Adam P. Arkin, Eric J. Alm