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CLUSTER
2008
IEEE
15 years 11 months ago
Impact of topology and link aggregation on a PC cluster with Ethernet
Abstract—In addition to its use in local area networks, Ethernet has been used for connecting hosts in the area of highperformance computing. Here, we investigated the impact of ...
Takafumi Watanabe, Masahiro Nakao, Tomoyuki Hiroya...
RECONFIG
2008
IEEE
225views VLSI» more  RECONFIG 2008»
15 years 11 months ago
A Hardware Filesystem Implementation for High-Speed Secondary Storage
Platform FPGAs are capable of hosting entire Linuxbased systems including standard peripherals, integrated network interface cards and even disk controllers on a single chip. File...
Ashwin A. Mendon, Ron Sass
BIBM
2007
IEEE
132views Bioinformatics» more  BIBM 2007»
15 years 11 months ago
A Divide-and-Conquer Implementation of Three Sequence Alignment and Ancestor Inference
In this paper, we present an algorithm to simultaneously align three biological sequences with affine gap model and infer their common ancestral sequence. Our algorithm can be fu...
Feng Yue, Jijun Tang
IEEEPACT
2007
IEEE
15 years 11 months ago
Performance Portable Optimizations for Loops Containing Communication Operations
Effective use of communication networks is critical to the performance and scalability of parallel applications. Partitioned Global Address Space languages like UPC bring the pro...
Costin Iancu, Wei Chen, Katherine A. Yelick
IPPS
2007
IEEE
15 years 11 months ago
Formal Analysis for Debugging and Performance Optimization of MPI
High-end computing is universally recognized to be a strategic tool for leadership in science and technology. A significant portion of high-end computing is conducted on clusters...
Ganesh Gopalakrishnan, Robert M. Kirby
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