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BMCBI
2007
186views more  BMCBI 2007»
15 years 6 months ago
GeneBins: a database for classifying gene expression data, with application to plant genome arrays
Background: To interpret microarray experiments, several ontological analysis tools have been developed. However, current tools are limited to specific organisms. Results: We deve...
Nicolas Goffard, Georg Weiller
ALMOB
2006
135views more  ALMOB 2006»
15 years 6 months ago
P-value based visualization of codon usage data
Two important and not yet solved problems in bacterial genome research are the identification of horizontally transferred genes and the prediction of gene expression levels. Both ...
Peter Meinicke, Thomas Brodag, Wolfgang Florian Fr...
SIGMOD
2008
ACM
140views Database» more  SIGMOD 2008»
15 years 6 months ago
Near-optimal algorithms for shared filter evaluation in data stream systems
We consider the problem of evaluating multiple overlapping queries defined on data streams, where each query is a conjunction of multiple filters and each filter may be shared acr...
Zhen Liu, Srinivasan Parthasarathy 0002, Anand Ran...
BMCBI
2004
146views more  BMCBI 2004»
15 years 6 months ago
Defining transcriptional networks through integrative modeling of mRNA expression and transcription factor binding data
Background: Functional genomics studies are yielding information about regulatory processes in the cell at an unprecedented scale. In the yeast S. cerevisiae, DNA microarrays have...
Feng Gao, Barrett C. Foat, Harmen J. Bussemaker
CANDC
2004
ACM
15 years 6 months ago
The difficult interpretation of transcriptome data: the case of the GATC regulatory network
Genomic analyses on part of Escherichia coli's chromosome had suggested the existence of a GATC regulated network. This has recently been confirmed through a transcriptome an...
Alessandra Riva, Marie-Odile Delorme, Tony Chevali...