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CANDC
2008
ACM
14 years 11 months ago
'Genome order index' should not be used for defining compositional constraints in nucleotide sequences
Background: The Z-curve is a three dimensional representation of DNA sequences proposed over a decade ago and has been extensively applied to sequence segmentation, horizontal gen...
Eran Elhaik, Dan Graur, Kresimir Josic
ICDCS
2008
IEEE
15 years 5 months ago
PFC: Transparent Optimization of Existing Prefetching Strategies for Multi-Level Storage Systems
The multi-level storage architecture has been widely adopted in servers and data centers. However, while prefetching has been shown as a crucial technique to exploit the sequentia...
Zhe Zhang, Kyuhyung Lee, Xiaosong Ma, Yuanyuan Zho...
ICPP
2009
IEEE
15 years 5 months ago
End-to-End Study of Parallel Volume Rendering on the IBM Blue Gene/P
—In addition to their role as simulation engines, modern supercomputers can be harnessed for scientific visualization. Their extensive concurrency, parallel storage systems, and...
Tom Peterka, Hongfeng Yu, Robert B. Ross, Kwan-Liu...
PPOPP
2006
ACM
15 years 5 months ago
Optimizing irregular shared-memory applications for distributed-memory systems
In prior work, we have proposed techniques to extend the ease of shared-memory parallel programming to distributed-memory platforms by automatic translation of OpenMP programs to ...
Ayon Basumallik, Rudolf Eigenmann
BMCBI
2010
174views more  BMCBI 2010»
14 years 11 months ago
The effect of prior assumptions over the weights in BayesPI with application to study protein-DNA interactions from ChIP-based h
Background: To further understand the implementation of hyperparameters re-estimation technique in Bayesian hierarchical model, we added two more prior assumptions over the weight...
Junbai Wang