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PPOPP
2006
ACM
15 years 3 months ago
Performance characterization of molecular dynamics techniques for biomolecular simulations
Large-scale simulations and computational modeling using molecular dynamics (MD) continues to make significant impacts in the field of biology. It is well known that simulations...
Sadaf R. Alam, Jeffrey S. Vetter, Pratul K. Agarwa...
IPPS
1996
IEEE
15 years 1 months ago
Practical Parallel Algorithms for Dynamic Data Redistribution, Median Finding, and Selection
A common statistical problem is that of nding the median element in a set of data. This paper presents a fastand portable parallel algorithm for nding the median given a set of el...
David A. Bader, Joseph JáJá
IPPS
2006
IEEE
15 years 3 months ago
Parallel genetic algorithm for SPICE model parameter extraction
Models of simulation program with integrated circuit emphasis (SPICE) are currently playing a central role in the connection between circuit design and chip fabrication communitie...
Yiming Li, Yen-Yu Cho
IPPS
2007
IEEE
15 years 4 months ago
Scheduling Issues in Optimistic Parallelization
Irregular applications, which rely on pointer-based data structures, are often difficult to parallelize. The inputdependent nature of their execution means that traditional paral...
Milind Kulkarni, Keshav Pingali
EUROPAR
2003
Springer
15 years 2 months ago
Dynamic Load Partitioning Strategies for Managing Data of Space and Time Heterogeneity in Parallel SAMR Applications
This paper presents the design and experimental evaluation of two dynamic load partitioning and balancing strategies for parallel Structured Adaptive Mesh Refinement (SAMR) applic...
Xiaolin Li, Manish Parashar