The performance of SIMD processors is often limited by the time it takes to transfer data between the centralized control unit and the parallel processor array. This is especially...
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Abstract. Large graphs involving millions of vertices are common in many practical applications and are challenging to process. Practical-time implementations using high-end comput...
OpenMP is a portable shared memory programming interface that promises high programmer productivity for multithreaded applications. It is designed for small and middle sized shared...
We present an overview of the Jahob system for modular analysis of data structure properties. Jahob uses a subset of Java as the implementation language and annotations with formu...