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IPPS
2007
IEEE
15 years 5 months ago
A Prototype Multithreaded Associative SIMD Processor
The performance of SIMD processors is often limited by the time it takes to transfer data between the centralized control unit and the parallel processor array. This is especially...
Kevin Schaffer, Robert A. Walker
IPPS
2007
IEEE
15 years 5 months ago
High Performance Database Searching with HMMer on FPGAs
1 Profile Hidden Markov Models (profile HMMs) are used as a popular bioinformatics tool for sensitive database searching, e.g. a set of not annotated protein sequences is compared...
Timothy F. Oliver, Leow Yuan Yeow, Bertil Schmidt
HIPC
2007
Springer
15 years 5 months ago
Accelerating Large Graph Algorithms on the GPU Using CUDA
Abstract. Large graphs involving millions of vertices are common in many practical applications and are challenging to process. Practical-time implementations using high-end comput...
Pawan Harish, P. J. Narayanan
HPCC
2007
Springer
15 years 5 months ago
Strategies and Implementation for Translating OpenMP Code for Clusters
OpenMP is a portable shared memory programming interface that promises high programmer productivity for multithreaded applications. It is designed for small and middle sized shared...
Deepak Eachempati, Lei Huang, Barbara M. Chapman
IPPS
2006
IEEE
15 years 5 months ago
An overview of the Jahob analysis system: project goals and current status
We present an overview of the Jahob system for modular analysis of data structure properties. Jahob uses a subset of Java as the implementation language and annotations with formu...
Viktor Kuncak, Martin C. Rinard