Sciweavers

NAR
2011
207views Computer Vision» more  NAR 2011»
14 years 17 days ago
PSORTdb - an expanded, auto-updated, user-friendly protein subcellular localization database for Bacteria and Archaea
The subcellular localization (SCL) of a microbial protein provides clues about its function, its suitability as a drug, vaccine or diagnostic target and aids experimental design. ...
Nancy Y. Yu, Matthew R. Laird, Cory Spencer, Fiona...
NAR
2011
204views Computer Vision» more  NAR 2011»
14 years 17 days ago
CLIPZ: a database and analysis environment for experimentally determined binding sites of RNA-binding proteins
The stability, localization and translation rate of mRNAs are regulated by a multitude of RNAbinding proteins (RBPs) that find their targets directly or with the help of guide RNA...
Mohsen Khorshid, Christoph Rodak, Mihaela Zavolan
NAR
2011
212views Computer Vision» more  NAR 2011»
14 years 17 days ago
The Sequence Read Archive
The combination of significantly lower cost and increased speed of sequencing has resulted in an explosive growth of data submitted into the primary next-generation sequence data ...
Rasko Leinonen, Hideaki Sugawara, Martin Shumway
NAR
2011
223views Computer Vision» more  NAR 2011»
14 years 17 days ago
ODB: a database for operon organizations, 2011 update
ODB (Operon DataBase) aims to collect data of all known and conserved operons in completely sequenced genomes. Three newly updated features of this database have been added as fol...
Shujiro Okuda, Akiyasu C. Yoshizawa
NAR
2011
162views Computer Vision» more  NAR 2011»
14 years 17 days ago
BSDB: the biomolecule stretching database
We describe the Biomolecule Stretching Data Base that has been recently set up at http://www.ifpan .edu.pl/BSDB/. It provides information about mechanostability of proteins. Its c...
Mateusz Sikora, Joanna I. Sulkowska, Bartlomiej S....
NAR
2011
193views Computer Vision» more  NAR 2011»
14 years 17 days ago
AREsite: a database for the comprehensive investigation of AU-rich elements
AREsite is an online resource for the detailed investigation of AU-rich elements (ARE) in vertebrate mRNA 30 -untranslated regions (UTRs). AREs are one of the most prominent cis-a...
Andreas R. Gruber, Jörg Fallmann, Franz Krato...
NAR
2011
199views Computer Vision» more  NAR 2011»
14 years 17 days ago
RepTar: a database of predicted cellular targets of host and viral miRNAs
Computational identification of putative microRNA (miRNA) targets is an important step towards elucidating miRNA functions. Several miRNA target-prediction algorithms have been de...
Naama Elefant, Amnon Berger, Harel Shein, Matan Ho...
NAR
2011
248views Computer Vision» more  NAR 2011»
14 years 17 days ago
NCBI GEO: archive for functional genomics data sets - 10 years on
A decade ago, the Gene Expression Omnibus (GEO) database was established at the National Center for Biotechnology Information (NCBI). The original objective of GEO was to serve as...
Tanya Barrett, Dennis B. Troup, Stephen E. Wilhite...
NAR
2011
225views Computer Vision» more  NAR 2011»
14 years 17 days ago
PHOSIDA 2011: the posttranslational modification database
The primary purpose of PHOSIDA (http://www .phosida.com) is to manage posttranslational modification sites of various species ranging from bacteria to human. Since its last report...
Florian Gnad, Jeremy Gunawardena, Matthias Mann 00...