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NAR
2011
215views Computer Vision» more  NAR 2011»
14 years 6 months ago
dbCRID: a database of chromosomal rearrangements in human diseases
Chromosomal rearrangement (CR) events result from abnormal breaking and rejoining of the DNA molecules, or from crossing-over between repetitive DNA sequences, and they are involv...
Fanlou Kong, Jing Zhu, Jun Wu, Jianjian Peng, Ying...
135
Voted
NAR
2011
225views Computer Vision» more  NAR 2011»
14 years 6 months ago
Gramene database in 2010: updates and extensions
Now in its 10th year, the Gramene database (http:// www.gramene.org) has grown from its primary focus on rice, the first fully-sequenced grass genome, to become a resource for maj...
Ken Youens-Clark, Edward S. Buckler, Terry M. Cass...
135
Voted
NAR
2011
209views Computer Vision» more  NAR 2011»
14 years 6 months ago
REPAIRtoire - a database of DNA repair pathways
REPAIRtoire is the first comprehensive database resource for systems biology of DNA damage and repair. The database collects and organizes the following types of information: (i) ...
Kaja Milanowska, Joanna Krwawicz, Grzegorz Papaj, ...
82
Voted
NAR
2011
246views Computer Vision» more  NAR 2011»
14 years 6 months ago
miRTarBase: a database curates experimentally validated microRNA-target interactions
Sheng-Da Hsu, Feng-Mao Lin, Wei-Yun Wu, Chao Liang...
99
Voted
NAR
2011
179views Computer Vision» more  NAR 2011»
14 years 6 months ago
The Protein Ontology: a structured representation of protein forms and complexes
The Protein Ontology (PRO) provides a formal, logically-based classification of specific protein classes including structured representations of protein isoforms, variants and mod...
Darren A. Natale, Cecilia N. Arighi, Winona C. Bar...
131
Voted
NAR
2011
214views Computer Vision» more  NAR 2011»
14 years 6 months ago
starBase: a database for exploring microRNA-mRNA interaction maps from Argonaute CLIP-Seq and Degradome-Seq data
MicroRNAs (miRNAs) represent an important class of small non-coding RNAs (sRNAs) that regulate gene expression by targeting messenger RNAs. However, assigning miRNAs to their regu...
Jian-Hua Yang, Jun-Hao Li, Peng Shao, Hui Zhou, Yu...
151
Voted
NAR
2011
221views Computer Vision» more  NAR 2011»
14 years 6 months ago
AGRIS: the Arabidopsis Gene Regulatory Information Server, an update
The Arabidopsis Gene Regulatory Information Server (AGRIS; http://arabidopsis.med.ohio-state .edu/) provides a comprehensive resource for gene regulatory studies in the model plan...
Alper Yilmaz, Maria Katherine Mejia-Guerra, Kyle K...
168
Voted
NAR
2011
215views Computer Vision» more  NAR 2011»
14 years 6 months ago
LSD: a leaf senescence database
By broad literature survey, we have developed a leaf senescence database (LSD, http://www .eplantsenescence.org/) that contains a total of 1145 senescence associated genes (SAGs) ...
Xiao-Chuan Liu, Zhonghai Li, Zhiqiang Jiang, Yi Zh...
132
Voted
NAR
2011
216views Computer Vision» more  NAR 2011»
14 years 6 months ago
ChemProt: a disease chemical biology database
Systems pharmacology is an emergent area that studies drug action across multiple scales of complexity, from molecular and cellular to tissue and organism levels. There is a criti...
Olivier Taboureau, Sonny Kim Nielsen, Karine Audou...
NAR
2011
195views Computer Vision» more  NAR 2011»
14 years 6 months ago
MitoGenesisDB: an expression data mining tool to explore spatio-temporal dynamics of mitochondrial biogenesis
Mitochondria constitute complex and flexible cellular entities, which play crucial roles in normal and pathological cell conditions. The database MitoGenesisDB focuses on the dyna...
Jean-Christophe Gelly, Mickael Orgeur, Claude Jacq...