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    BIOINFORMATICS
    2016
    85views more  BIOINFORMATICS 2016»
    LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
    9 years 5 months ago
    LOLA: enrichment analysis for genomic region sets and regulatory elements in R and Bioconductor
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    Nathan C. Sheffield, Christoph Bock
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    54
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    BIOINFORMATICS
    2016
    51views more  BIOINFORMATICS 2016»
    SHAPE directed RNA folding
    9 years 5 months ago
    SHAPE directed RNA folding
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    Ronny Lorenz, Dominik Luntzer, Ivo L. Hofacker, Pe...
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    60
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    BIOINFORMATICS
    2016
    99views more  BIOINFORMATICS 2016»
    Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models
    9 years 5 months ago
    Analyzing synergistic and non-synergistic interactions in signalling pathways using Boolean Nested Effect Models
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    Motivation: Understanding the structure and interplay of cellular signalling pathways is one of the great challenges in molecular biology. Boolean Networks can infer signalling ne...
    Martin Pirkl, Elisabeth Hand, Dieter Kube, Rainer ...
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    53
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    BIOINFORMATICS
    2016
    81views more  BIOINFORMATICS 2016»
    Probabilistic models of genetic variation in structured populations applied to global human studies
    9 years 5 months ago
    Probabilistic models of genetic variation in structured populations applied to global human studies
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    Wei Hao, Minsun Song, John D. Storey
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    54
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    BIOINFORMATICS
    2016
    50views more  BIOINFORMATICS 2016»
    RNF: a general framework to evaluate NGS read mappers
    9 years 5 months ago
    RNF: a general framework to evaluate NGS read mappers
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    Karel Brinda, Valentina Boeva, Gregory Kucherov
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    56
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    BIOINFORMATICS
    2016
    84views more  BIOINFORMATICS 2016»
    MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mappi
    9 years 5 months ago
    MT-HESS: an efficient Bayesian approach for simultaneous association detection in OMICS datasets, with application to eQTL mappi
    Download  bioinformatics.oxfordjournals.org
    Alex Lewin, Habib Saadi, James E. Peters, Aida Mor...
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    55
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    BIOINFORMATICS
    2016
    92views more  BIOINFORMATICS 2016»
    CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data
    9 years 5 months ago
    CLAMMS: a scalable algorithm for calling common and rare copy number variants from exome sequencing data
    Download  bioinformatics.oxfordjournals.org
    Jonathan S. Packer, Evan K. Maxwell, Colm O'Dushla...
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    58
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    BIOINFORMATICS
    2016
    114views more  BIOINFORMATICS 2016»
    Accurate estimation of isoelectric point of protein and peptide based on amino acid sequences
    9 years 5 months ago
    Accurate estimation of isoelectric point of protein and peptide based on amino acid sequences
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    Enrique Audain, Yassel Ramos, Henning Hermjakob, D...
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    58
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    BIOINFORMATICS
    2016
    70views more  BIOINFORMATICS 2016»
    An algorithm for automated layout of process description maps drawn in SBGN
    9 years 5 months ago
    An algorithm for automated layout of process description maps drawn in SBGN
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    Begüm Genc, Ugur Dogrusoz
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    151
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    BIOINFORMATICS
    2016
    136views more  BIOINFORMATICS 2016»
    De novo identification of replication-timing domains in the human genome by deep learning
    9 years 5 months ago
    De novo identification of replication-timing domains in the human genome by deep learning
    Download  bioinformatics.oxfordjournals.org
    Motivation: The de novo identification of the initiation and termination zones—regions that replicate earlier or later than their upstream and downstream neighbours, respective...
    Feng Liu, Chao Ren, Hao Li, Pingkun Zhou, Xiaochen...
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