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    BIOINFORMATICS
    2016
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    GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding
    9 years 5 months ago
    GERV: a statistical method for generative evaluation of regulatory variants for transcription factor binding
    Download  groups.csail.mit.edu
    Haoyang Zeng, Tatsunori B. Hashimoto, Daniel D. Ka...
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    47
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    BIOINFORMATICS
    2016
    68views more  BIOINFORMATICS 2016»
    No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites
    9 years 5 months ago
    No Promoter Left Behind (NPLB): learn de novo promoter architectures from genome-wide transcription start sites
    Download  bioinformatics.oxfordjournals.org
    Sneha Mitra, Leelavati Narlikar
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    48
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    BIOINFORMATICS
    2016
    84views more  BIOINFORMATICS 2016»
    CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data
    9 years 5 months ago
    CLUSTERnGO: a user-defined modelling platform for two-stage clustering of time-series data
    Download  bioinformatics.oxfordjournals.org
    Isik Baris Fidaner, Ayca Cankorur-Cetinkaya, Duygu...
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    45
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    BIOINFORMATICS
    2016
    81views more  BIOINFORMATICS 2016»
    HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS
    9 years 5 months ago
    HEALER: homomorphic computation of ExAct Logistic rEgRession for secure rare disease variants analysis in GWAS
    Download  ivm.sjtu.edu.cn
    Shuang Wang, Yuchen Zhang, Wenrui Dai, Kristin E. ...
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    51
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    BIOINFORMATICS
    2016
    92views more  BIOINFORMATICS 2016»
    Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel
    9 years 5 months ago
    Improved large-scale prediction of growth inhibition patterns using the NCI60 cancer cell line panel
    Download  bioinformatics.oxfordjournals.org
    Isidro Cortes-Ciriano, Gerard J. P. van Westen, Gu...
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    48
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    BIOINFORMATICS
    2016
    93views more  BIOINFORMATICS 2016»
    XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking
    9 years 5 months ago
    XLmap: an R package to visualize and score protein structure models based on sites of protein cross-linking
    Download  depts.washington.edu
    Devin K. Schweppe, Juan D. Chavez, James E. Bruce
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    46
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    BIOINFORMATICS
    2016
    111views more  BIOINFORMATICS 2016»
    Large-scale extraction of gene interactions from full-text literature using DeepDive
    9 years 5 months ago
    Large-scale extraction of gene interactions from full-text literature using DeepDive
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    Emily K. Mallory, Ce Zhang, Christopher Ré,...
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    60
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    BIOINFORMATICS
    2016
    99views more  BIOINFORMATICS 2016»
    catRAPID signature: identification of ribonucleoproteins and RNA-binding regions
    9 years 5 months ago
    catRAPID signature: identification of ribonucleoproteins and RNA-binding regions
    Download  public-files.prbb.org
    Motivation: Recent technological advances revealed that an unexpected large number of proteins interact with transcripts even if they lack annotated RNA-binding domains. We introd...
    Carmen Maria Livi, Petr Klus, Riccardo Delli Ponti...
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    47
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    BIOINFORMATICS
    2016
    83views more  BIOINFORMATICS 2016»
    regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests
    9 years 5 months ago
    regioneR: an R/Bioconductor package for the association analysis of genomic regions based on permutation tests
    Download  bioinformatics.oxfordjournals.org
    Bernat Gel, Anna Díez-Villanueva, Eduard Se...
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    57
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    BIOINFORMATICS
    2016
    105views more  BIOINFORMATICS 2016»
    JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
    9 years 5 months ago
    JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison
    Download  bioinformatics.oxfordjournals.org
    Michael Richter, Ramon Rosselló-Mora, Frank...
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