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    BIOINFORMATICS
    2016
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    Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates
    9 years 5 months ago
    Component-wise gradient boosting and false discovery control in survival analysis with high-dimensional covariates
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    Kevin He, Yanming Li, Ji Zhu, Hongliang Liu, Jeffr...
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    44
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    BIOINFORMATICS
    2016
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    Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments
    9 years 5 months ago
    Using de novo protein structure predictions to measure the quality of very large multiple sequence alignments
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    Gearoid Fox, Fabian Sievers, Desmond G. Higgins
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    54
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    BIOINFORMATICS
    2016
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    Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells
    9 years 5 months ago
    Identification of coupling DNA motif pairs on long-range chromatin interactions in human K562 cells
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    Ka-Chun Wong, Yue Li, Chengbin Peng
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    50
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    BIOINFORMATICS
    2016
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    Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization
    9 years 5 months ago
    Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization
    Download  bioinformatics.oxfordjournals.org
    Motivation: Biological systems are complex and challenging to model and therefore model reuse is highly desirable. To promote model reuse, models should include both information a...
    Goksel Misirli, Matteo Cavaliere, William Waites, ...
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    51
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    BIOINFORMATICS
    2016
    85views more  BIOINFORMATICS 2016»
    cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud
    9 years 5 months ago
    cl-dash: rapid configuration and deployment of Hadoop clusters for bioinformatics research in the cloud
    Download  bioinformatics.oxfordjournals.org
    Paul Hodor, Amandeep Chawla, Andrew Clark, Lauren ...
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    50
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    BIOINFORMATICS
    2016
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    Inferred miRNA activity identifies miRNA-mediated regulatory networks underlying multiple cancers
    9 years 5 months ago
    Inferred miRNA activity identifies miRNA-mediated regulatory networks underlying multiple cancers
    Download  gene-quantification.org
    Eunjee Lee, Koichi Ito, Yong Zhao, Eric E. Schadt,...
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    57
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    BIOINFORMATICS
    2016
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    NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
    9 years 5 months ago
    NanoOK: multi-reference alignment analysis of nanopore sequencing data, quality and error profiles
    Download  bioinformatics.oxfordjournals.org
    Richard M. Leggett, Darren Heavens, Mario Caccamo,...
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    54
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    BIOINFORMATICS
    2016
    74views more  BIOINFORMATICS 2016»
    SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data
    9 years 5 months ago
    SUPER-FOCUS: a tool for agile functional analysis of shotgun metagenomic data
    Download  bioinformatics.oxfordjournals.org
    Genivaldo Gueiros Z. Silva, Kevin T. Green, Bas E....
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    51
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    BIOINFORMATICS
    2016
    97views more  BIOINFORMATICS 2016»
    IsoMIF Finder: online detection of binding site molecular interaction field similarities
    9 years 5 months ago
    IsoMIF Finder: online detection of binding site molecular interaction field similarities
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    Matthieu Chartier, Etienne Adriansen, Rafael Najma...
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    46
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    BIOINFORMATICS
    2016
    47views more  BIOINFORMATICS 2016»
    PHYLUCE is a software package for the analysis of conserved genomic loci
    9 years 5 months ago
    PHYLUCE is a software package for the analysis of conserved genomic loci
    Download  faircloth-lab.org
    Brant C. Faircloth
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