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    ISMB
    1994
    113views Computational Biology» more  ISMB 1994»
    The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome
    13 years 6 months ago
    The Repeat Pattern Toolkit (RPT): Analyzing the Structure and Evolution of the C. elegans Genome
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    Pankaj Agarwal, David J. States
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    ISMB
    1994
    95views Computational Biology» more  ISMB 1994»
    Knowledge Discovery of Multilevel Protein Motifs
    13 years 6 months ago
    Knowledge Discovery of Multilevel Protein Motifs
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    A new category of protein motif is introduced. This type of motif captures, in addition to global structure, the nested structure of its componentparts. Adata.set of four proteins...
    Darrell Conklin, Suzanne Fortier, Janice I. Glasgo...
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    ISMB
    1994
    120views Computational Biology» more  ISMB 1994»
    VQLM: A Visual Query Language for Macromolecular Structural Databases
    13 years 6 months ago
    VQLM: A Visual Query Language for Macromolecular Structural Databases
    Download  www.aaai.org
    Dawn M. Cohen, Kumar Vadaparty, Bill Dickinson, He...
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    ISMB
    1994
    150views Computational Biology» more  ISMB 1994»
    Genetic Map Construction with Constraints
    13 years 6 months ago
    Genetic Map Construction with Constraints
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    Apilot program,CME,is describedfor generatinga physical genetic mapfromhybridization fingerprintingdata. CMEis implementedin the parallel constraint logic programming language Eli...
    Dominic A. Clark, Christopher J. Rawlings, Sylvie ...
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    ISMB
    1996
    155views Computational Biology» more  ISMB 1996»
    Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
    13 years 6 months ago
    Gene Recognition in Cyanobacterium Genomic Sequence Data Using the Hidden Markov Model
    Download  www.aaai.org
    We have developed a hidden Markov model (HMM)to detect the protein coding regions within one megabase contiguous sequence data, registered in a database called GenBankin eight ent...
    Tetsushi Yada, Makoto Hirosawa
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    ISMB
    1996
    139views Computational Biology» more  ISMB 1996»
    A Knowledge-Based Method for Protein Structure Refinement and Prediction
    13 years 6 months ago
    A Knowledge-Based Method for Protein Structure Refinement and Prediction
    Download  www.aaai.org
    The native conformation of a protein, in a given environment, is determined entirely by the various interatomic interactions dictated by the amino acid sequence (1-3). We describe...
    Shankar Subramaniam, David K. Tcheng, James M. Fen...
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    ISMB
    1996
    203views Computational Biology» more  ISMB 1996»
    Finding Genes in DNA Using Decision Trees and Dynamic Programming
    13 years 6 months ago
    Finding Genes in DNA Using Decision Trees and Dynamic Programming
    Download  www.aaai.org
    This study demonstratesthe use of decision tree classifiers as the basis for a general gene-finding system. The system uses a dynamic programmingalgorithm that. finds the optimal ...
    Steven Salzberg, Xin Chen, John Henderson, Kenneth...
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    ISMB
    1996
    124views Computational Biology» more  ISMB 1996»
    Compact Encoding Strategies for DNA Sequence Similarity Search
    13 years 6 months ago
    Compact Encoding Strategies for DNA Sequence Similarity Search
    Download  www.stateslab.org
    Determining whether two DNA sequences are similar is an essential component of DNA sequence analysis. Dynamic programming is the algorithm of choice if computational time is not t...
    David J. States, Pankaj Agarwal
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    ISMB
    1996
    144views Computational Biology» more  ISMB 1996»
    Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
    13 years 6 months ago
    Refining Neural Network Predictions for Helical Transmembrane Proteins by Dynamic Programming
    Download  cubic.bioc.columbia.edu
    For transmembrane proteins experimental determina-tion of three-dimensional structure is problematic. However, membrane proteins have important impact for molecular biology in gen...
    Burkhard Rost, Rita Casadio, Piero Fariselli
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    ISMB
    1996
    124views Computational Biology» more  ISMB 1996»
    Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models
    13 years 6 months ago
    Characterization of Prokaryotic and Eukaryotic Promoters Using Hidden Markov Models
    Download  linkage.rockefeller.edu
    Anders Gorm Pedersen, Pierre Baldi, Søren B...
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