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BMCBI
2005
160views more  BMCBI 2005»
8 years 10 months ago
Data-poor categorization and passage retrieval for Gene Ontology Annotation in Swiss-Prot
Background: In the context of the BioCreative competition, where training data were very sparse, we investigated two complementary tasks: 1) given a Swiss-Prot triplet, containing...
Frédéric Ehrler, Antoine Geissbü...
BMCBI
2005
117views more  BMCBI 2005»
8 years 10 months ago
An evaluation of GO annotation retrieval for BioCreAtIvE and GOA
Background: The Gene Ontology Annotation (GOA) database http://www.ebi.ac.uk/GOA aims to provide high-quality supplementary GO annotation to proteins in the UniProt Knowledgebase....
Evelyn Camon, Daniel Barrell, Emily Dimmer, Vivian...
BMCBI
2005
78views more  BMCBI 2005»
8 years 10 months ago
Automatically annotating documents with normalized gene lists
Jeremiah Crim, Ryan T. McDonald, Fernando Pereira
BMCBI
2005
125views more  BMCBI 2005»
8 years 10 months ago
Query3d: a new method for high-throughput analysis of functional residues in protein structures
Background: The identification of local similarities between two protein structures can provide clues of a common function. Many different methods exist for searching for similar ...
Gabriele Ausiello, Allegra Via, Manuela Helmer-Cit...
BMCBI
2005
153views more  BMCBI 2005»
8 years 10 months ago
Mining published lists of cancer related microarray experiments: Identification of a gene expression signature having a critical
Background: Routine application of gene expression microarray technology is rapidly producing large amounts of data that necessitate new approaches of analysis. The analysis of a ...
Giacomo Finocchiaro, Francesco Mancuso, Heiko M&uu...
BMCBI
2005
92views more  BMCBI 2005»
8 years 10 months ago
Browsing Isolated Population Data
Background: In our studies of genetically isolated populations in a remote mountain area in the center of Sardinia (Italy), we found that 80
Gianmaria Mancosu, Massimiliano Cosso, Francesca M...
BMCBI
2005
66views more  BMCBI 2005»
8 years 10 months ago
Recognition of protein/gene names from text using an ensemble of classifiers
Guodong Zhou, Dan Shen, Jie Zhang, Jian Su, Soon-H...
BMCBI
2005
142views more  BMCBI 2005»
8 years 10 months ago
High performance workflow implementation for protein surface characterization using grid technology
Background: This study concerns the development of a high performance workflow that, using grid technology, correlates different kinds of Bioinformatics data, starting from the ba...
Ivan Merelli, Giulia Morra, Daniele D'Agostino, An...
BMCBI
2005
155views more  BMCBI 2005»
8 years 10 months ago
Mining protein function from text using term-based support vector machines
Background: Text mining has spurred huge interest in the domain of biology. The goal of the BioCreAtIvE exercise was to evaluate the performance of current text mining systems. We...
Simon B. Rice, Goran Nenadic, Benjamin J. Stapley
BMCBI
2005
87views more  BMCBI 2005»
8 years 10 months ago
BioCreAtIvE Task 1A: gene mention finding evaluation
Background: The biological research literature is a major repository of knowledge. As the amount of literature increases, it will get harder to find the information of interest on...
Alexander S. Yeh, Alexander A. Morgan, Marc E. Col...
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