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    BIBE
    2003
    IEEE
    183views Bioinformatics» more  BIBE 2003»
    Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
    15 years 6 months ago
    Effective Indexing and Filtering for Similarity Search in Large Biosequence Databases
    Download  bmi.osu.edu
    We present a multi-dimensional indexing approach for fast sequence similarity search in DNA and protein databases. In particular, we propose effective transformations of subsequen...
    Ozgur Ozturk, Hakan Ferhatosmanoglu
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    BIBE
    2003
    IEEE
    133views Bioinformatics» more  BIBE 2003»
    A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale
    15 years 6 months ago
    A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale
    Download  www.genomes2life.org
    The tertiary (3D) structure of a protein contains the essential information for understanding the biological function of the protein at the molecular and cellular levels. Traditio...
    Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyl...
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    BIBE
    2003
    IEEE
    128views Bioinformatics» more  BIBE 2003»
    A Repulsive Clustering Algorithm for Gene Expression Data
    15 years 6 months ago
    A Repulsive Clustering Algorithm for Gene Expression Data
    Download  www.wseas.us
    : - Facing the development of microarray technology, clustering is currently a leading technique to gene expression data analysis. In this paper, we propose a novel algorithm calle...
    Chyun-Shin Cheng, Shiuan-Sz Wang
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    BIBE
    2003
    IEEE
    124views Bioinformatics» more  BIBE 2003»
    Prediction of Contact Maps Using Support Vector Machines
    15 years 6 months ago
    Prediction of Contact Maps Using Support Vector Machines
    Download  glaros.dtc.umn.edu
    Contact map prediction is of great interest for its application in fold recognition and protein 3D structure determination. In this paper we present a contact-map prediction algor...
    Ying Zhao, George Karypis
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    BIBE
    2003
    IEEE
    121views Bioinformatics» more  BIBE 2003»
    Time Series Analysis of Gene Expression and Location Data
    15 years 6 months ago
    Time Series Analysis of Gene Expression and Location Data
    Download  www.sns.ias.edu
    We develop a method for integrating time series expression profiles and factor-gene binding data to quantify dynamic aspects of gene regulation. We estimate latencies for transcr...
    Chen-Hsiang Yeang, Tommi Jaakkola
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