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DAM
2010
137views more  DAM 2010»
15 years 5 months ago
H-join decomposable graphs and algorithms with runtime single exponential in rankwidth
We introduce H -join decompositions of graphs, indexed by a fixed bipartite graph H . These decompositions are based on a graph operation that we call H -join, which adds edges be...
Binh-Minh Bui-Xuan, Jan Arne Telle, Martin Vatshel...
ALMOB
2006
109views more  ALMOB 2006»
15 years 5 months ago
A novel functional module detection algorithm for protein-protein interaction networks
Background: The sparse connectivity of protein-protein interaction data sets makes identification of functional modules challenging. The purpose of this study is to critically eva...
Woochang Hwang, Young-Rae Cho, Aidong Zhang, Mural...
BMCBI
2007
128views more  BMCBI 2007»
15 years 5 months ago
A robust and efficient algorithm for the shape description of protein structures and its application in predicting ligand bindin
Background: An accurate description of protein shape derived from protein structure is necessary to establish an understanding of protein-ligand interactions, which in turn will l...
Lei Xie, Philip E. Bourne
148
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ISCI
2008
130views more  ISCI 2008»
15 years 5 months ago
Unified eigen analysis on multivariate Gaussian based estimation of distribution algorithms
Multivariate Gaussian models are widely adopted in continuous Estimation of Distribution Algorithms (EDAs), and covariance matrix plays the essential role in guiding the evolution...
Weishan Dong, Xin Yao
161
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JCC
2006
110views more  JCC 2006»
15 years 5 months ago
Using internal and collective variables in Monte Carlo simulations of nucleic acid structures: Chain breakage/closure algorithm
: This article describes a method for solving the geometric closure problem for simplified models of nucleic acid structures by using the constant bond lengths approximation. The r...
Heinz Sklenar, Daniel Wüstner, Remo Rohs