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IPPS
2007
IEEE
15 years 4 months ago
Biomolecular Path Sampling Enabled by Processing in Network Storage
Computationally complex and data intensive atomic scale biomolecular simulation is enabled via Processing in Network Storage (PINS): a novel distributed system framework to overco...
Paul Brenner, Justin M. Wozniak, Douglas Thain, Aa...
CLUSTER
2008
IEEE
15 years 4 months ago
Redistribution aware two-step scheduling for mixed-parallel applications
— Applications raising in many scientific fields exhibit both data and task parallelism that have to be exploited efficiently. A classic approach is to structure those applica...
Sascha Hunold, Thomas Rauber, Frédér...
RECOMB
2008
Springer
15 years 10 months ago
Reconstructing the Evolutionary History of Complex Human Gene Clusters
Abstract. Clusters of genes that evolved from single progenitors via repeated segmental duplications present significant challenges to the generation of a truly complete human geno...
Adam C. Siepel, Eric D. Green, Giltae Song, Tom&aa...
DAC
2002
ACM
15 years 11 months ago
Energy estimation and optimization of embedded VLIW processors based on instruction clustering
Aim of this paper is to propose a methodology for the definition of an instruction-level energy estimation framework for VLIW (Very Long Instruction Word) processors. The power mo...
Andrea Bona, Mariagiovanna Sami, Donatella Sciuto,...
BIBE
2008
IEEE
142views Bioinformatics» more  BIBE 2008»
15 years 4 months ago
Optimizing performance, cost, and sensitivity in pairwise sequence search on a cluster of PlayStations
— The Smith-Waterman algorithm is a dynamic programming method for determining optimal local alignments between nucleotide or protein sequences. However, it suffers from quadrati...
Ashwin M. Aji, Wu-chun Feng